Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 176 1e-38 seq2 116 8e-21 >seq3 Length=2773601 Score = 176 bits (194), Expect = 1e-38 Identities = 167/211 (79%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| |||||||| || |||||||| |||||||| | |||| ||||| ||||||| Sbjct 154330 AACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAG-GTTCTGCCATCTT 154272 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | |||||||| || || ||||||| |||||||||||||||||| ||||| ||||||| Sbjct 154271 CTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTT 154212 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 ||||||| ||| || || ||||| || || || || |||||||| |||| |||| Sbjct 154211 GAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCT 154152 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | || |||||||| | |||||| Sbjct 154151 TACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121 Score = 176 bits (194), Expect = 1e-38 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| |||||||| ||||| || | ||| ||||| ||||| ||| Sbjct 1977680 ACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCCTCG 1977621 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || |||||||| ||||||||||| |||||||| ||||| ||||| || || |||||||| Sbjct 1977620 AGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGG 1977561 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| ||| || || || ||||| | ||||| Sbjct 1977560 ATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTA 1977501 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || || | || || ||||| Sbjct 1977500 CCAGTAAGGGTCTTGACGAA 1977481 Score = 174 bits (192), Expect = 3e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| || |||||||| ||||| |||| ||||| | ||||| ||||| || Sbjct 154780 GTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTG 154721 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | || ||||||||||||||||| || || ||||||||||| || Sbjct 154720 CTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTT 154661 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| ||||| || || || ||| ||||| || |||| ||||| || || Sbjct 154660 GGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGT 154601 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | |||||| Sbjct 154600 CAAAGTCTTGACGAAGATTTGCAT 154577 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| || || |||||||| ||||| |||| |||||| | ||||| || Sbjct 154558 AACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTC 154499 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| |||||||| || |||||||||| |||||||||||||||||| || || |||||||| Sbjct 154498 GAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTTG 154439 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || || ||||| || || || || ||||| ||||| | ||||| Sbjct 154438 GATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTT 154379 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || || || | |||||| Sbjct 154378 TCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349 Score = 168 bits (186), Expect = 1e-36 Identities = 166/212 (78%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||||||||| || || ||||||||||||||||| | |||| ||||| ||||||| Sbjct 154102 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAG-GTTCTGCCATCTT 154044 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | |||||||| || || ||||||| |||||||||||||||||| ||||| ||||||| Sbjct 154043 CTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTT 153984 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 |||| || |||||| || || || || || || || || ||||| || | |||| Sbjct 153983 GAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCT 153924 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || | || |||||||| | ||||||| Sbjct 153923 TACCAGTGAGGGTCTTTACGAAGATTTGCATT 153892 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| ||||| | || ||||||||||| Sbjct 155236 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTG 155177 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| |||| |||||||||||| |||||||| || |||||||| || || Sbjct 155176 CTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTT 155117 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||||||||||||| || || || || || | ||||| || || Sbjct 155116 GGTCTTGACATTATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGT 155057 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 155056 GAGGGTCTTGACGAAGATTTGCAT 155033 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| || || ||||| || || || |||| ||||| | || ||||| | || Sbjct 155008 GTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTG 154949 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | || ||||||||||||||||| ||||| ||||||||||| || Sbjct 154948 CTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTT 154889 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || || || || || ||||| || |||| ||||| || || Sbjct 154888 AGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGT 154829 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | |||||| Sbjct 154828 CAAAGTCTTGACGAAGATTTGCAT 154805 >seq2 Length=4956242 Score = 116 bits (128), Expect = 8e-21 Identities = 202/292 (69%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 160577 GCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGAC 160636 |||||||| | |||| || | |||| | | || | |||||||||||||| || | Sbjct 3633142 GCCAGAGATTTGTTCTTGGCTCTATGGATTCCTGACTTGTTCATGAAGAGAGTCAAGGCT 3633201 Query 160637 AATGGGGATTGGAGCCTTT--TCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATG 160694 || | |||||||| |||| | ||||||||||| ||||| | |||||||| |||| Sbjct 3633202 AACGAGGATTGGA--CTTTGATGTGTCCCAATGAGTGTCCTGGCTTGGATGATGTCTATG 3633259 Query 160695 GTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCG 160754 || |||||||| |||||||||| | ||||| || || || |||| || || | Sbjct 3633260 GTGACGAGTTCGTTGCTCTTTATGAGAAGTACGAGAAGGAAGGTAGAGGCAGAAGAACCA 3633319 Query 160755 TGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCT 160814 | ||||||||| | |||||| || || || | || ||| ||| |||| || | Sbjct 3633320 TCAAGGCCCAAAAGCTGTGGTATGCTATTCTCGAAGCTCAAACTGAGACTGGTAACCCAT 3633379 Query 160815 TTATCGCATACAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 | || || |||||||| | ||||||||||||| | ||||| || Sbjct 3633380 TCATGCTTTATAAGGATGCTTGTAATAGCAAGAGTAACCAACAAAACTTGGG 3633431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481543139068