Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq3 176 1e-38
seq2 116 8e-21
>seq3
Length=2773601
Score = 176 bits (194), Expect = 1e-38
Identities = 167/211 (79%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989
||| | ||| |||||||| || |||||||| |||||||| | |||| ||||| |||||||
Sbjct 154330 AACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAG-GTTCTGCCATCTT 154272
Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049
| | |||||||| || || ||||||| |||||||||||||||||| ||||| |||||||
Sbjct 154271 CTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTT 154212
Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
||||||| ||| || || ||||| || || || || |||||||| |||| ||||
Sbjct 154211 GAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCT 154152
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || | || |||||||| | ||||||
Sbjct 154151 TACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
Score = 176 bits (194), Expect = 1e-38
Identities = 159/200 (80%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||| ||||| |||||||| ||||| || | ||| ||||| ||||| |||
Sbjct 1977680 ACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCCTCG 1977621
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| |||||||| ||||||||||| |||||||| ||||| ||||| || || ||||||||
Sbjct 1977620 AGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGG 1977561
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| ||||||||||| ||| || || || ||||| | |||||
Sbjct 1977560 ATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTA 1977501
Query 195112 CCTGTCAAAGTTTTTACGAA 195131
|| || | || || |||||
Sbjct 1977500 CCAGTAAGGGTCTTGACGAA 1977481
Score = 174 bits (192), Expect = 3e-38
Identities = 161/204 (79%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| |||||||| || |||||||| ||||| |||| ||||| | ||||| ||||| ||
Sbjct 154780 GTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTG 154721
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| ||||| || | || ||||||||||||||||| || || ||||||||||| ||
Sbjct 154720 CTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTT 154661
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| ||||| || || || ||| ||||| || |||| ||||| || ||
Sbjct 154660 GGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGT 154601
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || ||||| | ||||||
Sbjct 154600 CAAAGTCTTGACGAAGATTTGCAT 154577
Score = 172 bits (190), Expect = 1e-37
Identities = 164/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||||||||| || || |||||||| ||||| |||| |||||| | ||||| ||
Sbjct 154558 AACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTC 154499
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||| |||||||| || |||||||||| |||||||||||||||||| || || ||||||||
Sbjct 154498 GAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTTG 154439
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||| || || ||||| || || || || ||||| ||||| | |||||
Sbjct 154438 GATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTT 154379
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| ||||| || || || || | ||||||
Sbjct 154378 TCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349
Score = 168 bits (186), Expect = 1e-36
Identities = 166/212 (78%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989
||| | ||||||||| || || ||||||||||||||||| | |||| ||||| |||||||
Sbjct 154102 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAG-GTTCTGCCATCTT 154044
Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049
| | |||||||| || || ||||||| |||||||||||||||||| ||||| |||||||
Sbjct 154043 CTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTT 153984
Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109
|||| || |||||| || || || || || || || || ||||| || | ||||
Sbjct 153983 GAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCT 153924
Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
| || || | || |||||||| | |||||||
Sbjct 153923 TACCAGTGAGGGTCTTTACGAAGATTTGCATT 153892
Score = 156 bits (172), Expect = 9e-33
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || || || ||||| |||| ||||| | || |||||||||||
Sbjct 155236 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCGAGCTG 155177
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || ||||| |||| |||||||||||| |||||||| || |||||||| || ||
Sbjct 155176 CTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTT 155117
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || ||||||||||||||| || || || || || | ||||| || ||
Sbjct 155116 GGTCTTGACATTATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTACCAGT 155057
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 155056 GAGGGTCTTGACGAAGATTTGCAT 155033
Score = 147 bits (162), Expect = 5e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||| || || ||||| || || || |||| ||||| | || ||||| | ||
Sbjct 155008 GTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCCAATTG 154949
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| ||||| || | || ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 154948 CTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTT 154889
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| || || || || || || ||||| || |||| ||||| || ||
Sbjct 154888 AGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTACCAGT 154829
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || ||||| | ||||||
Sbjct 154828 CAAAGTCTTGACGAAGATTTGCAT 154805
>seq2
Length=4956242
Score = 116 bits (128), Expect = 8e-21
Identities = 202/292 (69%), Gaps = 4/292 (1%)
Strand=Plus/Plus
Query 160577 GCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGAC 160636
|||||||| | |||| || | |||| | | || | |||||||||||||| || |
Sbjct 3633142 GCCAGAGATTTGTTCTTGGCTCTATGGATTCCTGACTTGTTCATGAAGAGAGTCAAGGCT 3633201
Query 160637 AATGGGGATTGGAGCCTTT--TCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATG 160694
|| | |||||||| |||| | ||||||||||| ||||| | |||||||| ||||
Sbjct 3633202 AACGAGGATTGGA--CTTTGATGTGTCCCAATGAGTGTCCTGGCTTGGATGATGTCTATG 3633259
Query 160695 GTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCG 160754
|| |||||||| |||||||||| | ||||| || || || |||| || || |
Sbjct 3633260 GTGACGAGTTCGTTGCTCTTTATGAGAAGTACGAGAAGGAAGGTAGAGGCAGAAGAACCA 3633319
Query 160755 TGAAGGCCCAAGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCT 160814
| ||||||||| | |||||| || || || | || ||| ||| |||| || |
Sbjct 3633320 TCAAGGCCCAAAAGCTGTGGTATGCTATTCTCGAAGCTCAAACTGAGACTGGTAACCCAT 3633379
Query 160815 TTATCGCATACAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866
| || || |||||||| | ||||||||||||| | ||||| ||
Sbjct 3633380 TCATGCTTTATAAGGATGCTTGTAATAGCAAGAGTAACCAACAAAACTTGGG 3633431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481543139068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |