Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq3 102 5e-17
>seq3
Length=2773601
Score = 102 bits (112), Expect = 5e-17
Identities = 153/215 (71%), Gaps = 8/215 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| ||||||| || ||| || |||||||| ||||| ||||| | || |||| ||
Sbjct 154558 AACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTC 154499
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || || || ||||| || |||| ||| |||||| | || | |||||||||||
Sbjct 154498 GAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTTG 154439
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||||| || || || |||| || ||| || ||| || |||| ||| ||||
Sbjct 154438 GATCTTAGTCTTAAC--AT--TATCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGG 154383
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| ||||| || | ||||| |||||||| ||||||
Sbjct 154382 TCTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 154348
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| || ||| || ||||| || || || || | | ||| |||| ||
Sbjct 154102 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTC 154043
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
| || || || ||||| || |||| ||| |||||| | || | || ||||||||
Sbjct 154042 TAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 153983
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
|||||| ||||| || | ||||| ||| || |||||| || | || ||||
Sbjct 153982 AATCTTGGTCTTGAC--AT--TGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGG 153927
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || ||||| ||||| || ||||| |||||
Sbjct 153926 TCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 153893
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| ||||| || || | || | || ||
Sbjct 155241 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCG 155182
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || |||||||| || |||| ||| |||||| | || | |||||||||||
Sbjct 155181 AGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 155122
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || |||| || | ||| | ||| || |||| || || ||
Sbjct 155121 ATCTTGGTCTTGAC--AT--TATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGT 155066
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || ||||| ||||| || ||||| ||||||
Sbjct 155065 CTTACCAGTGAGGGTCTTGACGAAGATTTGCATA 155032
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||| | ||| ||| || |||||||| ||||| || || | || |||| ||
Sbjct 154785 ACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCG 154726
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || || || || || | || || |||||| | || | ||||||||||| |
Sbjct 154725 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGA 154666
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | ||| || ||||| |||| || || || ||
Sbjct 154665 ATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTA 154606
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || | |||||| || ||||| ||||||
Sbjct 154605 CCAGTCAAAGTCTTGACGAAGATTTGCATA 154576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633584174112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |