Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 >seq3 Length=2773601 Score = 111 bits (122), Expect = 1e-19 Identities = 366/565 (65%), Gaps = 22/565 (4%) Strand=Plus/Plus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 || |||| ||| || || || |||||| ||||| || |||| ||||| | ||| || Sbjct 791453 TTGAGCGCTTCAACATGGTCTGCGTAGACATGAGCATCGCCCATTGTGTGAATAAAATCA 791512 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 || ||||| || || | ||| ||||| | ||| | | || || ||| || Sbjct 791513 CCACATTCTATTCCACAAACCTTAGCGATCATCTTCGTTAACAAAGCATAAGAGGCAATA 791572 Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 29979 ||||| || || || | ||||| || | || || || | |||||| || |||||| Sbjct 791573 TTAAATGGCACTCCCAAGCCCATATCACAACTTCTTTGATATAACTGACAAGAAAGCTCT 791632 Query 29980 ------------CCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCC 30027 | | ||| || ||||||||| | | ||| || || ||||||||| Sbjct 791633 GGCTTACCATTACGGAAGCTTACATAAAACTGAGAAAATACGTGACAAGGTGGAAGAGCC 791692 Query 30028 ATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTG 30087 || | || || ||| ||||| || ||| ||| || || ||||| | ||| | Sbjct 791693 ATATCGTTCATATCGGCGGGATTCCATGCTGACATGATTATTCGTCTGTCATATGGTGTC 791752 Query 30088 TTCCTGATGAG--GTC-CACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTC 30143 | | |||| || ||| || ||| || ||||| || || | || ||||| || Sbjct 791753 TCCTTGATTTTTCGTATCAC----TTCTGCCAGTTGATCTACTCCTTTACCAGAGTAATC 791808 Query 30144 TGCC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 | | || ||| || | || || ||||| ||||| ||||| || ||||| |||| Sbjct 791809 AGTATCGCAA-TCCTCATATTTGGCGCCAAAATGTCTCCATTGGAAACCATACACGGGTC 791867 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 | || |||||||| ||||| || | || | |||||||||||| |||| || | Sbjct 791868 CAAGATCTCCCTCACGTCTGTGTTCTAGTCCTCGCTTGTCCAAAAACTCTCGACTTCCAT 791927 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 || | ||||| || | || || | || || ||| ||| || | || |||||| ||| Sbjct 791928 TGCCATCCCAAATATGAACGCCTCTGTCAGAAAGCAATTTCGAATCAGTAGACCCTTTGA 791987 Query 30323 CGAACCACAGCAGCTCCTCCACGAC 30347 | ||||| | || || |||| ||| Sbjct 791988 CAAACCATAATAGTTCTTCCAAGAC 792012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617580079892