Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 1e-19
>seq3
Length=2773601
Score = 111 bits (122), Expect = 1e-19
Identities = 366/565 (65%), Gaps = 22/565 (4%)
Strand=Plus/Plus
Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859
|| |||| ||| || || || |||||| ||||| || |||| ||||| | ||| ||
Sbjct 791453 TTGAGCGCTTCAACATGGTCTGCGTAGACATGAGCATCGCCCATTGTGTGAATAAAATCA 791512
Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919
|| ||||| || || | ||| ||||| | ||| | | || || ||| ||
Sbjct 791513 CCACATTCTATTCCACAAACCTTAGCGATCATCTTCGTTAACAAAGCATAAGAGGCAATA 791572
Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 29979
||||| || || || | ||||| || | || || || | |||||| || ||||||
Sbjct 791573 TTAAATGGCACTCCCAAGCCCATATCACAACTTCTTTGATATAACTGACAAGAAAGCTCT 791632
Query 29980 ------------CCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCC 30027
| | ||| || ||||||||| | | ||| || || |||||||||
Sbjct 791633 GGCTTACCATTACGGAAGCTTACATAAAACTGAGAAAATACGTGACAAGGTGGAAGAGCC 791692
Query 30028 ATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTG 30087
|| | || || ||| ||||| || ||| ||| || || ||||| | ||| |
Sbjct 791693 ATATCGTTCATATCGGCGGGATTCCATGCTGACATGATTATTCGTCTGTCATATGGTGTC 791752
Query 30088 TTCCTGATGAG--GTC-CACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTC 30143
| | |||| || ||| || ||| || ||||| || || | || ||||| ||
Sbjct 791753 TCCTTGATTTTTCGTATCAC----TTCTGCCAGTTGATCTACTCCTTTACCAGAGTAATC 791808
Query 30144 TGCC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202
| | || ||| || | || || ||||| ||||| ||||| || ||||| ||||
Sbjct 791809 AGTATCGCAA-TCCTCATATTTGGCGCCAAAATGTCTCCATTGGAAACCATACACGGGTC 791867
Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262
| || |||||||| ||||| || | || | |||||||||||| |||| || |
Sbjct 791868 CAAGATCTCCCTCACGTCTGTGTTCTAGTCCTCGCTTGTCCAAAAACTCTCGACTTCCAT 791927
Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322
|| | ||||| || | || || | || || ||| ||| || | || |||||| |||
Sbjct 791928 TGCCATCCCAAATATGAACGCCTCTGTCAGAAAGCAATTTCGAATCAGTAGACCCTTTGA 791987
Query 30323 CGAACCACAGCAGCTCCTCCACGAC 30347
| ||||| | || || |||| |||
Sbjct 791988 CAAACCATAATAGTTCTTCCAAGAC 792012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617580079892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |