Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 156 8e-33 >seq2 Length=4956242 Score = 156 bits (172), Expect = 8e-33 Identities = 482/739 (65%), Gaps = 29/739 (4%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || ||||| |||||| |||||||||||||| ||||| || ||| |||||||| ||| Sbjct 3220307 TGATAGTCAGACACTCTCTTCTCAAAGAAGTTGGTCTTGCCAGACAATGAGATGTTTTCC 3220248 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCA---G 47955 ||||| |||||||||| | ||||| ||| | | ||||| ||| | Sbjct 3220247 ATGAAATCAAAGGGGTTGGTAGCATTATATACC----TTA-------CTGTTACCAAGGG 3220199 Query 47956 CAGGTGAT-------CCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGC 48008 | || || | || || |||| ||||||| |||| || || ||||| | Sbjct 3220198 AAAGTAATAATCTGTCAGCAACAAACTCAATGTATTGGCACATAAGCTTGGCATTCATTC 3220139 Query 48009 CTATGAGGG-ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCC 48067 | | || ||| || |||||| | || | |||||||| || || |||||||| Sbjct 3220138 CCAAAAGACTACATGG-CAAAGCATCAGTCAAGAACTCCTTTTCAATAATAACGGCTTCA 3220080 Query 48068 CCCACAATCTGCTTAACGCGGGACT-CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAG 48126 | ||||| | || |||| || ||| | ||||| ||||| | | | || Sbjct 3220079 GTGATAATCTTTTCAATAACAGACTTCTTAGG-TCTGTTGACAAGGTG---GCCGAAAAG 3220024 Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || || ||||| || |||||| |||||| || || ||| | |||| ||||| Sbjct 3220023 CAAACAAGCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGT 3219964 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 ||||||||||||| || | || || | |||||| || || || || |||||||| Sbjct 3219963 CAGACCAGGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAA 3219904 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 |||||| ||||| || || || || || ||| | ||| | |||| | | | || Sbjct 3219903 GAAGATACCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATC 3219844 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 | ||||| || |||||||| ||||||||||| || ||||| || | || || || Sbjct 3219843 AGCAATCCATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGC 3219784 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 |||| | || ||| || ||| | ||| || | || || ||| Sbjct 3219783 ATGGAACAAAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTA 3219724 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||| | || | ||||| || || ||||| ||||| || | | ||||| Sbjct 3219723 GGTCTCTGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGG 3219664 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 | || ||||| |||||||| || | || ||||| ||||| || ||||||||||| Sbjct 3219663 AATTTGAACTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGC 3219604 Query 48547 AGCAAAGAAGGCAAGGACA 48565 ||||||||| ||||||||| Sbjct 3219603 AGCAAAGAATGCAAGGACA 3219585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532753423360