Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 170 4e-37 >seq2 Length=4956242 Score = 170 bits (188), Expect = 4e-37 Identities = 562/863 (65%), Gaps = 17/863 (2%) Strand=Plus/Minus Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| | ||||||| || |||| || | || ||| ||||| ||| ||| ||||| Sbjct 3633450 GTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATCCTT 3633391 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 || ||||| || || |||||||| ||||| | ||||| | ||| || | Sbjct 3633390 ATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAGCTT 3633331 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGAGC 221950 | ||| | | || || || || ||| || ||| || ||| | || ||||| Sbjct 3633330 TTGGGCCTTGATGGTTCTTCTGCCTCTACCTTC---CTTCTCGTACTTCTCATAAAGAGC 3633274 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | | |||| ||||| || | || |||| ||| |||||| ||||||||||| | Sbjct 3633273 AA--CGAACTCGTCACCATAGACATCATCCAAGCCAGGACACTCATTGGGACACATCAAA 3633216 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||| | || ||| | ||||| |||| |||||| | ||| || ||||| || ||| Sbjct 3633215 GTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAGAGCCAAG 3633156 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || | |||||||| || || ||| |||| || || | ||| || | || ||| Sbjct 3633155 AACAAATCTCTGGCACGGACTTCTTCCTTACCGTGATTCTTTCGCAGCTCAATGAATTCA 3633096 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 |||| ||| | ||||| ||||||| || | ||| | ||| || |||||||| || ||| Sbjct 3633095 AAAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAAGCACCTGGTCGCTTATTACCA 3633036 Query 222191 CCCTGATCCACCATCCTCT-CCAG-AGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 ||||||| || ||| ||| ||| | ||||| | | | | || || | |||| Sbjct 3633035 CCCTGAT-CAACAT-ATCTAGCAGTATTATTGAAAACTCTCAACATGGGAACAATACCGT 3632978 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308 | || |||||| || || |||||| | || || | | ||| || || Sbjct 3632977 TTGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCACGGATATTATGAACACTCA 3632918 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 || |||||||| || || || |||| ||| || |||| | ||| || |||| Sbjct 3632917 AACCAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTCTTCAAAGTATCGTAAATGC 3632858 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 | || ||||| || ||||| | ||| | || || ||||| ||||| |||| |||| | Sbjct 3632857 CATCTATAGAATCGTCCTTCATGTTAACCAAGAAGCAAGAGGACATTTGAGGCTTGGGAG 3632798 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 || || || |||| ||||| ||| |||||||| || |||||| | || Sbjct 3632797 TACCAGCATTGTACAGAGTGGGGGAGGCATGTGTAAAATACTTTTGAGACATGTAGTTGT 3632738 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | || || | | | ||| ||| | || ||||| | || ||||||| || Sbjct 3632737 ATGTTTCAATGGCCTTGGTGATATCAGAACCATGAATACCAACAGCTACTCTCATGATCA 3632678 Query 222549 TGTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| ||||| |||| | | ||| || | || ||||| ||||||| |||||| Sbjct 3632677 TGTGTTGGGGTCTCTCGGCGATTTTACCATT-AATCT--TGAGCAAGTACGATCTTTCCA 3632621 Query 222606 GAGTCTTGAACCCAAAGTAGTTG 222628 ||||||||| || ||||| ||| Sbjct 3632620 AAGTCTTGAAACCGAAGTAATTG 3632598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844753557760