Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq3 98.7 1e-15
>seq3
Length=2773601
Score = 98.7 bits (108), Expect = 1e-15
Identities = 187/272 (69%), Gaps = 4/272 (1%)
Strand=Plus/Minus
Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331
||||| || | ||||| | | | ||| |||||||| || ||||| || || || |||
Sbjct 478496 CCATGGTAGACAGCATACATAGCGGCCATGTTTGCGAGAAGGGCTTGGGCCGTACAAATG 478437
Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391
|| || || || || | | ||| || || || | |||||| || || |||||| |
Sbjct 478436 TTGGAAGTAGCCTTTTCACGACGAATGTGTTGTTCACGAGTTTGAAGAGCCAATCTGAAA 478377
Query 139392 GCAGGATTGCCTTCGCTGTCC--ACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCT 139449
||||||||||| | |||| ||| || |||| | | | ||||| ||||||||||
Sbjct 478376 GCAGGATTGCCCAAACGGTCCTTACT-AC-GACCGATGAGACGACCAGGCATCTTTCTCT 478319
Query 139450 TATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATAC 139509
| | ||| | || ||||| |||||||| || || || ||||| | ||||| ||
Sbjct 478318 TTTCAGAGTCAGCAACAGCGAAGAAGGCAGCATGGGGTCCACCATATCCAAAAGGAACAC 478259
Query 139510 CAAACCTTTGCATACTACCTACAGCAATATCA 139541
| || |||||| |||| | ||||||||
Sbjct 478258 CGAATCTTTGCGAGTTACCAAACACAATATCA 478227
Score = 96.9 bits (106), Expect = 4e-15
Identities = 164/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|||| |||||||| || || ||||| ||||| || || ||||||||||| ||||| ||
Sbjct 479618 ACACAGATAGGACCGACACCTGGACCACCACCACCGTGAGGAATACAGAAAGTCTTGTGC 479559
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302
|| || | || |||||||| || ||| |||| || | ||||| | ||||||
Sbjct 479558 AAGTTCAAGTGGCATACATCAGCTCCAATCTCACCGGGAGAAGTGAGACCGATTTGTGCA 479499
Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362
|| | || || ||||| | ||||| ||||| |||| || || |||| | || |
Sbjct 479498 TTCATGTTGGCTCCATCCATGTATACTTGACCTCCATGAGAGTGGACAATCTCA-ATGGC 479440
Query 138363 TGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416
| || | | | || || ||||||| ||| || ||||| ||||||||| ||
Sbjct 479439 TCTCTTCACACCAGGCTCGAACACACCATAAGTAGAAGGATAGGTAATCATAGTA 479385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578998371050080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |