Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 >seq3 Length=2773601 Score = 98.7 bits (108), Expect = 1e-15 Identities = 187/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 ||||| || | ||||| | | | ||| |||||||| || ||||| || || || ||| Sbjct 478496 CCATGGTAGACAGCATACATAGCGGCCATGTTTGCGAGAAGGGCTTGGGCCGTACAAATG 478437 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 || || || || || | | ||| || || || | |||||| || || |||||| | Sbjct 478436 TTGGAAGTAGCCTTTTCACGACGAATGTGTTGTTCACGAGTTTGAAGAGCCAATCTGAAA 478377 Query 139392 GCAGGATTGCCTTCGCTGTCC--ACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCT 139449 ||||||||||| | |||| ||| || |||| | | | ||||| |||||||||| Sbjct 478376 GCAGGATTGCCCAAACGGTCCTTACT-AC-GACCGATGAGACGACCAGGCATCTTTCTCT 478319 Query 139450 TATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATAC 139509 | | ||| | || ||||| |||||||| || || || ||||| | ||||| || Sbjct 478318 TTTCAGAGTCAGCAACAGCGAAGAAGGCAGCATGGGGTCCACCATATCCAAAAGGAACAC 478259 Query 139510 CAAACCTTTGCATACTACCTACAGCAATATCA 139541 | || |||||| |||| | |||||||| Sbjct 478258 CGAATCTTTGCGAGTTACCAAACACAATATCA 478227 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||| |||||||| || || ||||| ||||| || || ||||||||||| ||||| || Sbjct 479618 ACACAGATAGGACCGACACCTGGACCACCACCACCGTGAGGAATACAGAAAGTCTTGTGC 479559 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || | || |||||||| || ||| |||| || | ||||| | |||||| Sbjct 479558 AAGTTCAAGTGGCATACATCAGCTCCAATCTCACCGGGAGAAGTGAGACCGATTTGTGCA 479499 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||||| ||||| |||| || || |||| | || | Sbjct 479498 TTCATGTTGGCTCCATCCATGTATACTTGACCTCCATGAGAGTGGACAATCTCA-ATGGC 479440 Query 138363 TGTC-TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 | || | | | || || ||||||| ||| || ||||| ||||||||| || Sbjct 479439 TCTCTTCACACCAGGCTCGAACACACCATAAGTAGAAGGATAGGTAATCATAGTA 479385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998371050080