Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq1 140 4e-28 >seq2 Length=4956242 Score = 205 bits (226), Expect = 1e-47 Identities = 1074/1685 (64%), Gaps = 57/1685 (3%) Strand=Plus/Plus Query 75275 GAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTTCAA 75333 || |||||| || | ||||| ||| |||| || | || || | || || || | ||| Sbjct 3632731 GAAACATACAACTACATGTCTCAAAAGTATTTT-ACACATGCCTCCCCCACTCTGTACAA 3632789 Query 75334 TGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTC 75393 ||||||||| || | || || |||||| ||||||| | | || ||||| || || Sbjct 3632790 TGCTGGTACTCCCAAGCCTCAAATGTCCTCTTGCTTCTTGGTTAACATGAAGGACGATTC 3632849 Query 75394 AATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGG 75453 || | || || || | ||| | | | ||||| || ||||||| ||||| || Sbjct 3632850 TATAGATGGCATTTACGATACTTTGAAGACTTGTGCCTTGATTTCAAAGTCTGCTGGTGG 3632909 Query 75454 TATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGG 75513 |||||| || | ||| || | | || | | || ||| || || || || Sbjct 3632910 TATTGGTTTGAGTGTTCATAATATCCGTGCTACTGGCTCCTACATTGCTGGAACTAACGG 3632969 Query 75514 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 75573 | ||| | |||||| |||| ||| | | || || || || || | ||||| | Sbjct 3632970 TACCTCAAACGGTATTGTTCCCATGTTGAGAGTTTTCAATAATACTGCTAGATATGTTGA 3633029 Query 75574 TCAAGCGGGGCGT---CG-CAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCG 75629 ||| | || | || | ||| | | | || | |||||||| || ||||||| | Sbjct 3633030 TCAGGGTGGTAATAAGCGACCAGGTG-CTTTTGCCATGTACTTGGAGCCTTGGCATGATG 3633088 Query 75630 ATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT-AGA 75688 || | | || ||| ||||| | ||| || || ||| | ||||| | || ||| ||| Sbjct 3633089 ATGTTTTTGAATTCATTGAGCTGCGAAAGAATCACGGTAAGGAAGAAG-TCCGTGCCAGA 3633147 Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGGGTG 75746 ||| | || | | || |||||||| ||| | ||||||||| | || ||| | | | Sbjct 3633148 GATTTGTTCTTGGCTCTATGGATTCCTGACTTGTTCATGAAGAGAGTCAAGGCTAACGAG 3633207 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG---GGTG 75803 | | ||| || | | ||||| | || || || || || | || |||| Sbjct 3633208 G--ATTGGACTTTGATGTGTCCCAATGAGTGTCCTGG---CTTGGATGATGTCTATGGTG 3633262 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 | ||||| | || || || ||||| || |||| ||||||| || || | | Sbjct 3633263 ACGAGTTCGTTGCTCTTTATGAGAAGTACGAGAAGGAAGGTAGAGGCAGAAGAACCAT-C 3633321 Query 75864 CAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 || | | | | | ||| | ||||||||| || | || || |||||||| | |||| Sbjct 3633322 AAGGCCCAAAAGCTGTGGTATGCTATTCTCGAAGCTCAAACTGAGACTGGTAACCCATTC 3633381 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 |||||||| |||||||||||||| | |||||||||||| | || ||||| || |||||| Sbjct 3633382 ATGCTTTATAAGGATGCTTGTAATAGCAAGAGTAACCAACAAAACTTGGGTACTATCAAG 3633441 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 ||| || | ||| |||||| | |||||| | | || || || || || Sbjct 3633442 TCCTCCAACTTGTGCTGTGAAATTGTTGAGTACTCTTCTCCTGAAGAAGTTGCCGTCTGT 3633501 Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGT---ATGTCAATGAAGAGACTCGCACTTTTG-- 76097 ||||||||||| | | || || | || | ||| ||| | | |||| Sbjct 3633502 AATTTGGCATCGTTGTCTCTACCTGCTTTCGTTGAAAGTGATGAG----GAAGGTTTGTG 3633557 Query 76098 -----ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | | | | |||||||| || | | ||| |||| || | ||| | || | Sbjct 3633558 GTATAACTTTAACAAACTTCACGAGGTTGCCAAGGTTGTCACTAGAAACTTGAATGTTAT 3633617 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGCGACACAGAC 76211 ||||||||||| ||||| || || || || ||||| ||| | || ||||||| Sbjct 3633618 TATTGACAGAAACTTTTACCCTGTCAAGGAAGC-TGAAAGAAGCAATTTCCGTCACAGAC 3633676 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTG 76271 | |||| | | ||| |||||||| | || |||| ||||| ||| | |||| | Sbjct 3633677 CCATTGCTCTTGGTATTCAAGGTTTGGCCGATGCCTTTATGGCTCTCCGTTTGCCATTCG 3633736 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | || ||| |||||| | |||| | || || ||| ||||| ||||| || | Sbjct 3633737 ACTCCCCTGAGGCCAAGCAATTGAACGTTCAAATTGCTGAGACCATCTATCATGCTGCTG 3633796 Query 76332 TGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 | || | |||| | || ||| | || |||||||||| | | ||||||| Sbjct 3633797 TTGAATCTTCGGTTGAACTCGCCGAATTGTACGGACCCTATGAGACTTACCAAGGTTCTC 3633856 Query 76392 CCGCGTCCCAAGGGGTGCTT--CAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAAC 76447 | || | ||| |||| || || |||||| |||||| | | | || | | || | Sbjct 3633857 CTGC--CTCAAAGGGTCTTTTGCAATTTGATTTGTGGG-ATATCACTCCCACTGATC-TC 3633912 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | ||||||| || ||||||| | || || | ||||| | ||| ||| | Sbjct 3633913 TGGGACTGGGCTGCTCTCAAGAAGAAGATGGCTAAGCATGGTCTGAGAAACTCCCTTCTC 3633972 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || ||||| || ||||| || ||||||| | ||||| || ||||| || ||| Sbjct 3633973 GTTGCTCCTATGCCTACTGCCTCAACATCACAAATTCTTGGTAACAACGAATGTTTCGAA 3634032 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 || |||||| | ||||||||| | ||| || || ||||| || ||||| || Sbjct 3634033 CCTTACACATCCAACATCTACTCTCGTAGAGTTCTTGCCGGTGAATTCCAAATTGTTAAT 3634092 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATT--GGTCTCTGGTCCAAGGATATGAAGGATC 76685 | | | || ||||| | |||| || || ||| || | |||||| || Sbjct 3634093 CAATGGTTGTTGAAGGACCT--TGTCGATTTGGGACTGTGGGGAGAGAACATGAAGAATA 3634150 Query 76686 TCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAG 76744 | | || | | |||||| ||||| ||||| | | ||||| || ||||||||| Sbjct 3634151 GAATTATTGCCAAC-AATGGTTCTATTCAGAATATTCCTAACATCCCTGAGGATATCAAG 3634209 Query 76745 AATCTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGCA 76801 | || || || ||||| | ||| || | ||||||| ||||| || Sbjct 3634210 GCATTGTATAAGACTGTTTGGGAGCTTTCTCAGAAGACA---ATCATTGATATGGCTGCT 3634266 Query 76802 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACG 76861 ||||||| | ||| || |||||||||||| | |||| | | ||| || ||| || Sbjct 3634267 GATCGTGCTGCCTTTATCGATCAAAGTCAATCTTTGAACATTTACATTCAAGCTCCTACT 3634326 Query 76862 ATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATG 76921 ||| ||| | || ||||||| | |||| ||| || |||| || || || |||||| Sbjct 3634327 ATGGGCAAATTGACTAGTATGCATTTCTACGGCTGGCAAAAGGGTCTTAAGACAGGAATG 3634386 Query 76922 TACTA 76926 ||||| Sbjct 3634387 TACTA 3634391 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTC--TCGCT 65068 ||||||||| |||||||||| | ||||| | |||| ||| | | || || | Sbjct 3219799 CCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTG-CTGATGATCAGTC-CA 3219856 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 | || || ||||| || |||| ||||| || ||||||||||||||||| || |||| Sbjct 3219857 CTTTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCAT 3219916 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 | | ||| | |||||||||||||| || |||||||| || || |||||||| | Sbjct 3219917 TTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAACG 3219976 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || | || || || ||||| || | ||| || ||||| Sbjct 3219977 AATTGATCTCGCGTGATGAAGGCATGCACACCGATTTTGC 3220016 >seq1 Length=5930846 Score = 140 bits (154), Expect = 4e-28 Identities = 307/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 ||||||||||| ||||| || || | ||||| | ||| ||||||||||||||||||| Sbjct 4966230 GCACCAATGCCCACAGCTTCAACATCGCAAATTCTTGGTTTTAATGAATGCTTTGAACCA 4966171 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 |||| | || ||||| ||| | || | ||||| || |||||||| || Sbjct 4966170 ATCACATCGAATATCTATGCGAGGCGTGTACTTTCTGGTGAATTCCAAGTTGTCAACGAG 4966111 Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATG 76690 |||| || || ||||| | | || | || ||| || ||||| | | || | || Sbjct 4966110 TACCTAGTGAAGGACCTTGTGCAACTTAGGCTGTGGAATAATGATATCAGGAATATGATT 4966051 Query 76691 GTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTC 76750 | | | || ||| || |||||||| ||| | || || || | || | || || | Sbjct 4966050 ATTAGCGAGGATGGCTCTATTCAAAACATCCCCGAGATTCCCAAGGAGCTGAAAGATATA 4965991 Query 76751 TACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGT 76810 || || | |||||| | | || | | | ||||||||||| || || ||||| Sbjct 4965990 TATAAGACTGCCTGGGAATTGAGCCAAAAGGTTATTATTGACATGGCAGCTGACCGTGGC 4965931 Query 76811 CGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAG 76870 || | |||||||| ||| ||||||||| | |||||| ||| ||| || || Sbjct 4965930 CGTTATATTGATCAGTCTCAGAGTATGAATATTTTCATGAAAAATCCTACTGCAGGAAAA 4965871 Query 76871 CTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTC 76930 ||| | ||||||| | || | ||||| ||||| | ||||| |||||||||||| | Sbjct 4965870 CTCACGAGTATGCATTTTTATGGCTGGAAGAAGGGGTTAAAAACAGGAATGTACTATTTA 4965811 Query 76931 CGATCAAAGGCGAAAGC--CCG-ACCAATTCAGTTCA 76964 ||| | || || ||| | | ||| |||||||||| Sbjct 4965810 CGAACGAAAGC---AGCTTCTGCACCTATTCAGTTCA 4965777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569570171520