Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq2 205 1e-47
seq1 140 4e-28
>seq2
Length=4956242
Score = 205 bits (226), Expect = 1e-47
Identities = 1074/1685 (64%), Gaps = 57/1685 (3%)
Strand=Plus/Plus
Query 75275 GAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTTCAA 75333
|| |||||| || | ||||| ||| |||| || | || || | || || || | |||
Sbjct 3632731 GAAACATACAACTACATGTCTCAAAAGTATTTT-ACACATGCCTCCCCCACTCTGTACAA 3632789
Query 75334 TGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTC 75393
||||||||| || | || || |||||| ||||||| | | || ||||| || ||
Sbjct 3632790 TGCTGGTACTCCCAAGCCTCAAATGTCCTCTTGCTTCTTGGTTAACATGAAGGACGATTC 3632849
Query 75394 AATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGG 75453
|| | || || || | ||| | | | ||||| || ||||||| ||||| ||
Sbjct 3632850 TATAGATGGCATTTACGATACTTTGAAGACTTGTGCCTTGATTTCAAAGTCTGCTGGTGG 3632909
Query 75454 TATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGG 75513
|||||| || | ||| || | | || | | || ||| || || || ||
Sbjct 3632910 TATTGGTTTGAGTGTTCATAATATCCGTGCTACTGGCTCCTACATTGCTGGAACTAACGG 3632969
Query 75514 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 75573
| ||| | |||||| |||| ||| | | || || || || || | ||||| |
Sbjct 3632970 TACCTCAAACGGTATTGTTCCCATGTTGAGAGTTTTCAATAATACTGCTAGATATGTTGA 3633029
Query 75574 TCAAGCGGGGCGT---CG-CAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCG 75629
||| | || | || | ||| | | | || | |||||||| || ||||||| |
Sbjct 3633030 TCAGGGTGGTAATAAGCGACCAGGTG-CTTTTGCCATGTACTTGGAGCCTTGGCATGATG 3633088
Query 75630 ATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT-AGA 75688
|| | | || ||| ||||| | ||| || || ||| | ||||| | || ||| |||
Sbjct 3633089 ATGTTTTTGAATTCATTGAGCTGCGAAAGAATCACGGTAAGGAAGAAG-TCCGTGCCAGA 3633147
Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGGGTG 75746
||| | || | | || |||||||| ||| | ||||||||| | || ||| | | |
Sbjct 3633148 GATTTGTTCTTGGCTCTATGGATTCCTGACTTGTTCATGAAGAGAGTCAAGGCTAACGAG 3633207
Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG---GGTG 75803
| | ||| || | | ||||| | || || || || || | || ||||
Sbjct 3633208 G--ATTGGACTTTGATGTGTCCCAATGAGTGTCCTGG---CTTGGATGATGTCTATGGTG 3633262
Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863
| ||||| | || || || ||||| || |||| ||||||| || || | |
Sbjct 3633263 ACGAGTTCGTTGCTCTTTATGAGAAGTACGAGAAGGAAGGTAGAGGCAGAAGAACCAT-C 3633321
Query 75864 CAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922
|| | | | | | ||| | ||||||||| || | || || |||||||| | ||||
Sbjct 3633322 AAGGCCCAAAAGCTGTGGTATGCTATTCTCGAAGCTCAAACTGAGACTGGTAACCCATTC 3633381
Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982
|||||||| |||||||||||||| | |||||||||||| | || ||||| || ||||||
Sbjct 3633382 ATGCTTTATAAGGATGCTTGTAATAGCAAGAGTAACCAACAAAACTTGGGTACTATCAAG 3633441
Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042
||| || | ||| |||||| | |||||| | | || || || || ||
Sbjct 3633442 TCCTCCAACTTGTGCTGTGAAATTGTTGAGTACTCTTCTCCTGAAGAAGTTGCCGTCTGT 3633501
Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGT---ATGTCAATGAAGAGACTCGCACTTTTG-- 76097
||||||||||| | | || || | || | ||| ||| | | ||||
Sbjct 3633502 AATTTGGCATCGTTGTCTCTACCTGCTTTCGTTGAAAGTGATGAG----GAAGGTTTGTG 3633557
Query 76098 -----ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152
| | | | |||||||| || | | ||| |||| || | ||| | || |
Sbjct 3633558 GTATAACTTTAACAAACTTCACGAGGTTGCCAAGGTTGTCACTAGAAACTTGAATGTTAT 3633617
Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGCGACACAGAC 76211
||||||||||| ||||| || || || || ||||| ||| | || |||||||
Sbjct 3633618 TATTGACAGAAACTTTTACCCTGTCAAGGAAGC-TGAAAGAAGCAATTTCCGTCACAGAC 3633676
Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTG 76271
| |||| | | ||| |||||||| | || |||| ||||| ||| | |||| |
Sbjct 3633677 CCATTGCTCTTGGTATTCAAGGTTTGGCCGATGCCTTTATGGCTCTCCGTTTGCCATTCG 3633736
Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331
| || ||| |||||| | |||| | || || ||| ||||| ||||| || |
Sbjct 3633737 ACTCCCCTGAGGCCAAGCAATTGAACGTTCAAATTGCTGAGACCATCTATCATGCTGCTG 3633796
Query 76332 TGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391
| || | |||| | || ||| | || |||||||||| | | |||||||
Sbjct 3633797 TTGAATCTTCGGTTGAACTCGCCGAATTGTACGGACCCTATGAGACTTACCAAGGTTCTC 3633856
Query 76392 CCGCGTCCCAAGGGGTGCTT--CAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAAC 76447
| || | ||| |||| || || |||||| |||||| | | | || | | || |
Sbjct 3633857 CTGC--CTCAAAGGGTCTTTTGCAATTTGATTTGTGGG-ATATCACTCCCACTGATC-TC 3633912
Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507
| ||||||| || ||||||| | || || | ||||| | ||| ||| |
Sbjct 3633913 TGGGACTGGGCTGCTCTCAAGAAGAAGATGGCTAAGCATGGTCTGAGAAACTCCCTTCTC 3633972
Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567
| || || ||||| || ||||| || ||||||| | ||||| || ||||| || |||
Sbjct 3633973 GTTGCTCCTATGCCTACTGCCTCAACATCACAAATTCTTGGTAACAACGAATGTTTCGAA 3634032
Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627
|| |||||| | ||||||||| | ||| || || ||||| || ||||| ||
Sbjct 3634033 CCTTACACATCCAACATCTACTCTCGTAGAGTTCTTGCCGGTGAATTCCAAATTGTTAAT 3634092
Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATT--GGTCTCTGGTCCAAGGATATGAAGGATC 76685
| | | || ||||| | |||| || || ||| || | |||||| ||
Sbjct 3634093 CAATGGTTGTTGAAGGACCT--TGTCGATTTGGGACTGTGGGGAGAGAACATGAAGAATA 3634150
Query 76686 TCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAG 76744
| | || | | |||||| ||||| ||||| | | ||||| || |||||||||
Sbjct 3634151 GAATTATTGCCAAC-AATGGTTCTATTCAGAATATTCCTAACATCCCTGAGGATATCAAG 3634209
Query 76745 AATCTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGCA 76801
| || || || ||||| | ||| || | ||||||| ||||| ||
Sbjct 3634210 GCATTGTATAAGACTGTTTGGGAGCTTTCTCAGAAGACA---ATCATTGATATGGCTGCT 3634266
Query 76802 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACG 76861
||||||| | ||| || |||||||||||| | |||| | | ||| || ||| ||
Sbjct 3634267 GATCGTGCTGCCTTTATCGATCAAAGTCAATCTTTGAACATTTACATTCAAGCTCCTACT 3634326
Query 76862 ATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATG 76921
||| ||| | || ||||||| | |||| ||| || |||| || || || ||||||
Sbjct 3634327 ATGGGCAAATTGACTAGTATGCATTTCTACGGCTGGCAAAAGGGTCTTAAGACAGGAATG 3634386
Query 76922 TACTA 76926
|||||
Sbjct 3634387 TACTA 3634391
Score = 98.7 bits (108), Expect = 1e-15
Identities = 156/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTC--TCGCT 65068
||||||||| |||||||||| | ||||| | |||| ||| | | || || |
Sbjct 3219799 CCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTG-CTGATGATCAGTC-CA 3219856
Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128
| || || ||||| || |||| ||||| || ||||||||||||||||| || ||||
Sbjct 3219857 CTTTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCAT 3219916
Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188
| | ||| | |||||||||||||| || |||||||| || || |||||||| |
Sbjct 3219917 TTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAACG 3219976
Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
|| | || || || ||||| || | ||| || |||||
Sbjct 3219977 AATTGATCTCGCGTGATGAAGGCATGCACACCGATTTTGC 3220016
>seq1
Length=5930846
Score = 140 bits (154), Expect = 4e-28
Identities = 307/457 (67%), Gaps = 6/457 (1%)
Strand=Plus/Minus
Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570
||||||||||| ||||| || || | ||||| | ||| |||||||||||||||||||
Sbjct 4966230 GCACCAATGCCCACAGCTTCAACATCGCAAATTCTTGGTTTTAATGAATGCTTTGAACCA 4966171
Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630
|||| | || ||||| ||| | || | ||||| || |||||||| ||
Sbjct 4966170 ATCACATCGAATATCTATGCGAGGCGTGTACTTTCTGGTGAATTCCAAGTTGTCAACGAG 4966111
Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATG 76690
|||| || || ||||| | | || | || ||| || ||||| | | || | ||
Sbjct 4966110 TACCTAGTGAAGGACCTTGTGCAACTTAGGCTGTGGAATAATGATATCAGGAATATGATT 4966051
Query 76691 GTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTC 76750
| | | || ||| || |||||||| ||| | || || || | || | || || |
Sbjct 4966050 ATTAGCGAGGATGGCTCTATTCAAAACATCCCCGAGATTCCCAAGGAGCTGAAAGATATA 4965991
Query 76751 TACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGT 76810
|| || | |||||| | | || | | | ||||||||||| || || |||||
Sbjct 4965990 TATAAGACTGCCTGGGAATTGAGCCAAAAGGTTATTATTGACATGGCAGCTGACCGTGGC 4965931
Query 76811 CGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAG 76870
|| | |||||||| ||| ||||||||| | |||||| ||| ||| || ||
Sbjct 4965930 CGTTATATTGATCAGTCTCAGAGTATGAATATTTTCATGAAAAATCCTACTGCAGGAAAA 4965871
Query 76871 CTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTC 76930
||| | ||||||| | || | ||||| ||||| | ||||| |||||||||||| |
Sbjct 4965870 CTCACGAGTATGCATTTTTATGGCTGGAAGAAGGGGTTAAAAACAGGAATGTACTATTTA 4965811
Query 76931 CGATCAAAGGCGAAAGC--CCG-ACCAATTCAGTTCA 76964
||| | || || ||| | | ||| ||||||||||
Sbjct 4965810 CGAACGAAAGC---AGCTTCTGCACCTATTCAGTTCA 4965777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569570171520
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