Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 150 3e-31 seq2 109 1e-18 >seq3 Length=2773601 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | || | || || ||| || Sbjct 154356 ATTTGCATACCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTG 154297 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || || ||||| ||| |||||||| || || |||||||| | ||| ||||| Sbjct 154296 TAATCAGACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGG 154237 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| |||||||| || | ||| ||||||||| || Sbjct 154236 TCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGTCTTAACATTATCAATAGTATCAGAG 154177 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| ||||| || || ||||| || || || ||||| || |||||||| Sbjct 154176 GACTCAACTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || |||| || | |||| || || || ||| Sbjct 155040 ATTTGCATACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTA 154981 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | || || ||||| || || || ||||| || | |||||| Sbjct 154980 TAGTCGGAGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGG 154921 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| || || || || | || |||||||| || Sbjct 154920 TCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAG 154861 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| ||||| ||||| ||||| || | || || || || |||||||| Sbjct 154860 GACTCGACTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805 Score = 105 bits (116), Expect = 1e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || || || || || | || | ||| || ||| || ||||| Sbjct 1977701 ATACCACCTCTCAAACGGAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCA 1977642 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| || | ||| || ||||| || || | | |||||||| || Sbjct 1977641 GAAAGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGG 1977582 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| || ||||| || | || ||| || ||||||||||| Sbjct 1977581 GGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCG 1977522 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA 193351 || || || || || || ||||| || || || || || || Sbjct 1977521 ACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 1977481 >seq2 Length=4956242 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || || || | |||| ||| || || || ||||| || Sbjct 2345899 ACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 2345958 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | ||| || || ||||| || || | |||||||| || || Sbjct 2345959 AAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGG 2346018 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || || ||||| || ||||| || | ||| ||||| |||||||||||||| Sbjct 2346019 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAAC 2346078 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || || || || |||||||| Sbjct 2346079 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654355017280