Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 150 3e-31 seq3 114 2e-20 >seq2 Length=4956242 Score = 150 bits (166), Expect = 3e-31 Identities = 366/554 (66%), Gaps = 5/554 (1%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| |||||||| ||||| | |||||||| | || || |||||||| ||||| Sbjct 3220022 AAACAAGCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTC 3219963 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| | || | || || | ||| || || || || | ||| ||| Sbjct 3219962 AGACCAGGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAG 3219903 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || |||||||||||| || || || | | | ||||||||| || | | || || Sbjct 3219902 AAGATACCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCA-TC 3219844 Query 18335 AGTA-TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 || | ||||| | ||||| || | | ||||| || ||| | || ||||| Sbjct 3219843 AGCAATCCATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGC 3219784 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 || |||||| | || || | ||| || ||||||||||| || | || || || Sbjct 3219783 ATGGAACAAAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTA 3219724 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | || | ||| ||| | ||||| || || |||| ||||| | | |||||||| Sbjct 3219723 GGTCTCTGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGGG 3219664 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 | ||||| || | | | |||||||| ||||| ||||| || || ||||| || | || Sbjct 3219663 AATTTGAACTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAGC 3219604 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA---TTGTT 18630 || || ||||| | ||| || ||| | | |||| ||| || ||| | | Sbjct 3219603 AGCAAAGAATGCAAGGACACGAGAGATAAAAAATCTCTCATCATCATTAAGACGGTGCTC 3219544 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| ||| || || ||| || ||||| |||||| | ||||| ||||| | || || Sbjct 3219543 CCAGTCACTGATGTCCTTTCCTAAATCAATTTCTTCAGCAGTCCAGAAAGAAGCCTCAGC 3219484 Query 18691 CTGTTTGTACATTT 18704 ||| |||||||||| Sbjct 3219483 CTGCTTGTACATTT 3219470 >seq3 Length=2773601 Score = 114 bits (126), Expect = 2e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| || || || | |||||||| ||| Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || | ||| || ||||| || || || || |||||||| ||| Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| |||||||| ||||| ||| | ||| | || || || || Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| || | || ||||| ||||| Sbjct 154529 AT-TCAAAAGGAATCTACTCTTCACTTAGT 154557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| || ||||| || | || ||||| ||| Sbjct 155033 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACGCTCGAGGTCGAGTCTTCG 155092 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || | || || ||||| || || ||||| || ||||| ||| Sbjct 155093 GACACCATTGATAATGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 155152 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 |||||| | || | ||||||||||||||||||||| Sbjct 155153 CAAAGACTCATCTTTGCCGGTAAGCAGCTCGAAGA 155187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871963406400