Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 140 6e-28 seq2 91.5 3e-13 >seq3 Length=2773601 Score = 140 bits (154), Expect = 6e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | |||||| | || || || | ||| | || ||| || || || ||||| Sbjct 154350 ATACCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAATC 154292 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||| |||| || ||||| ||||||||||| || | ||| ||||| || || Sbjct 154291 AGACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGG 154232 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| ||||| | || |||||| |||| ||| || || || Sbjct 154231 AGGAATACCTTCCTTGTCTTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTC 154172 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||||||||| |||||||| | || || | || || ||||| Sbjct 154171 AACTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | |||||| | || || || | ||||| || ||| || ||||| ||||| Sbjct 154122 ATACCACCACGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAATC 154064 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| || |||| |||| || ||||| ||||||||||| || | ||| ||||| || || Sbjct 154063 AGACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGG 154004 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| || || | || ||||| |||| ||| || || || Sbjct 154003 AGGAATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTC 153944 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| ||||| |||||||| | || || | || || |||||| Sbjct 153943 AACCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATT 153892 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | ||||| || | ||||| || ||| || || || || || Sbjct 154578 ATACCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 154520 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| || | ||| |||||||||||||| | ||| ||||| || || Sbjct 154519 GGAAAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGG 154460 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || ||||| || ||| | || |||||| |||| ||| || || || Sbjct 154459 AGGAATACCCTCCTTGTCTTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTC 154400 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| || || || | ||| || ||||| Sbjct 154399 GACTTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349 >seq2 Length=4956242 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | ||||| ||| || ||| || || ||||| Sbjct 2345899 ACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 2345958 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||| |||||||||||||| || | |||||||| || || Sbjct 2345959 AAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGG 2346018 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || ||||| || || | || ||||| |||| || || || || || Sbjct 2346019 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAAC 2346078 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| || | || || | || || ||||| Sbjct 2346079 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479949545400