Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq3 140 6e-28
seq2 91.5 3e-13
>seq3
Length=2773601
Score = 140 bits (154), Expect = 6e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|||||||| | |||||| | || || || | ||| | || ||| || || || |||||
Sbjct 154350 ATACCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAATC 154292
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||| || |||| |||| || ||||| ||||||||||| || | ||| ||||| || ||
Sbjct 154291 AGACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGG 154232
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| || ||||| ||||| | || |||||| |||| ||| || || ||
Sbjct 154231 AGGAATACCTTCCTTGTCTTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTC 154172
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| ||||||||||| |||||||| | || || | || || |||||
Sbjct 154171 AACTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
Score = 132 bits (146), Expect = 9e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|||||||| | |||||| | || || || | ||||| || ||| || ||||| |||||
Sbjct 154122 ATACCACCACGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAATC 154064
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||| || |||| |||| || ||||| ||||||||||| || | ||| ||||| || ||
Sbjct 154063 AGACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGG 154004
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| || ||||| || || | || ||||| |||| ||| || || ||
Sbjct 154003 AGGAATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTC 153944
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| ||||| |||||||| | || || | || || ||||||
Sbjct 153943 AACCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATT 153892
Score = 122 bits (134), Expect = 2e-22
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|||||||| | ||||| | ||||| || | ||||| || ||| || || || || ||
Sbjct 154578 ATACCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 154520
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| | || || |||| || | ||| |||||||||||||| | ||| ||||| || ||
Sbjct 154519 GGAAAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGG 154460
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || || || || ||||| || ||| | || |||||| |||| ||| || || ||
Sbjct 154459 AGGAATACCCTCCTTGTCTTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTC 154400
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || ||||| || ||||| || || || | ||| || |||||
Sbjct 154399 GACTTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349
>seq2
Length=4956242
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||||| | || | || | ||||| ||| || ||| || || |||||
Sbjct 2345899 ACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 2345958
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || || |||| || | ||| |||||||||||||| || | |||||||| || ||
Sbjct 2345959 AAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGG 2346018
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||| || || ||||| || || | || ||||| |||| || || || || ||
Sbjct 2346019 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAAC 2346078
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || ||||| || | || || | || || |||||
Sbjct 2346079 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984479949545400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |