Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 228 2e-54
seq2 221 4e-52
>seq1
Length=5930846
Score = 228 bits (252), Expect = 2e-54
Identities = 607/916 (66%), Gaps = 11/916 (1%)
Strand=Plus/Plus
Query 155592 GACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCA 155650
|| ||||| ||||| || || ||||||| | | | || ||| | | |||||| |||
Sbjct 4966724 GATGCCAGGTTACACACAGCGGTCTCCTGTTTGGACGA-GTACTGGATAATCTCCGTGCA 4966782
Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710
|| || ||| || || || || | ||| || || || ||||| |||||||| | |||
Sbjct 4966783 TAGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGATTTTCTGTTACAGGAATC 4966842
Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770
||||| || ||| |||| ||||| ||||| | || | || | ||| | ||||||
Sbjct 4966843 TTTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTCTAAAATGGCAAACCAGAG 4966902
Query 155771 GTCACGGGCATTAAT-TTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCG 155829
| |||| | | |||| | |||| ||| |||||| | | |||| |
Sbjct 4966903 CTTCTGGGCTCTGACCTTGCGAACA-TGTCTGTTTTCTTTTTCATATCTTTTGTACAAAG 4966961
Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889
|| | | || |||||||| ||| | ||||| | ||| || |||| |
Sbjct 4966962 TTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGCTTCATCAGGTGAAAATAAGC 4967021
Query 155890 ACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGA 155949
|||| || || | |||| | ||| || | |||| ||||| |||||| |
Sbjct 4967022 ACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATCAGGGATCCAAAGAGCATAAA 4967081
Query 155950 AAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCT 156009
| | ||| | || || | || || | ||||||||| || |||| |||||| || ||
Sbjct 4967082 ACAAGTCTCGAGCTCTTAATTCTTCTTTGCCGTGATTTTTTCGTAACTCTAAAAACTCTA 4967141
Query 156010 CAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCAC 156066
|||||| || || |||| || ||||||||| ||| || ||| ||||
Sbjct 4967142 ATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAGCACCTGGTCTTTTGTTACCAC 4967201
Query 156067 CCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGG 156126
||||||||||||||| ||||| || || || || | |||||| || | ||| |||||||
Sbjct 4967202 CCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTAGCATCGGCACAATTCCATTGG 4967261
Query 156127 AAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTC 156186
| ||||||| | || ||| | | ||| | || || | ||||||||| || || |
Sbjct 4967262 AGCTGCCATTACTCCCAGCAATGTAAGCACCCGTCGACCGGATATTATGAATGTGGAGAC 4967321
Query 156187 CAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTT 156246
|||| ||||||| ||| || || |||||| || |||| |||| | |||| ||||
Sbjct 4967322 CAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGTCTTTTAGGGTATCGTAAATGCCTT 4967381
Query 156247 CAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTC 156306
| || ||||| |||| ||| | || | |||| || ||||||||| || || |
Sbjct 4967382 CTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGGACGATAATTGAGGATTAGGCGTGC 4967441
Query 156307 CAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCG-TAT 156365
||| |||||||||||| |||| ||||| | ||||| || | ||||| |||| | |||
Sbjct 4967442 CAGAGTTGAATAGTGTTGGTGACGCATGGGTGAAATATTTTTCCGACAT-TAATTGATAT 4967500
Query 156366 GTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATA 156425
||||| | | | | || | || || ||||||| | | || ||||| ||||
Sbjct 4967501 GTCTCGATGACCCTATCTATATCTCTGCCATGAATACCCACCGCCACTCTCATTAACATC 4967560
Query 156426 TGCTGAGGACGCTCTACAATCACT-CCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGT 156484
|| || || | || | || | || |||| ||| || ||||| | | ||| || ||
Sbjct 4967561 TGTTGCGGCCTTTCAATAA-CTCTGCCATACATTTTAAGCAGGTACGATCTTTCGAGCGT 4967619
Query 156485 TTTAAACCCGAAATAA 156500
|| || |||||||||
Sbjct 4967620 CTTTAATCCGAAATAA 4967635
Score = 100 bits (110), Expect = 8e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331
|||||||| ||||| | ||||||||||||||| ||||| | ||| ||||||||||||
Sbjct 3952305 AGCACCGTATGCAATTACACAATCACGTTCCATCTCACCGAGACGAAGACCACCATCACG 3952364
Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391
|| ||||| | | | ||||||||| | |||| ||| ||||| | ||| ||
Sbjct 3952365 GGATCTACCTTCGGTAGGTTGACGAGTCAGTACAGCTCTGGGACCTCTTGGACGGGCATG 3952424
Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAA 233431
|||||||| ||||||| ||||| || | |||||||
Sbjct 3952425 CATTTTATCCATAACCATGTGCTTAAGCTTTTGATAATAA 3952464
Score = 95.1 bits (104), Expect = 4e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541
|| ||||||| || ||| | ||||||||| ||||| ||||||| |||||||||||||||
Sbjct 3952303 GAAGCACCGTATGCAATTACACAATCACGTTCCATCTCACCGAGACGAAGACCACCATCA 3952362
Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573
|| | ||||| |||| ||| |||||||| ||
Sbjct 3952363 CGGGATCTACCTTCGGTAGGTTGACGAGTCAG 3952394
>seq2
Length=4956242
Score = 221 bits (244), Expect = 4e-52
Identities = 600/907 (66%), Gaps = 11/907 (1%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || ||||| |||||||||| ||| || |||||| || || || || | |||||
Sbjct 3633474 GTACTCAACAATTTCACAGCACAAGTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTT 3633415
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
| || || |||||||||||||| || || ||| ||||| | || ||||| | || ||
Sbjct 3633414 ACTCTTGCTATTACAAGCATCCTTATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGC 3633355
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATT-TGCTTGTTGTATCTGCCTTCCG 155808
|| ||||| ||| || | |||| || || | ||| | | ||| ||||||
Sbjct 3633354 TTCGAGAATAGCATACCACAGCTTTTGGGCCTTGATGGTTCTTCT-GCCTCTACCTTCCT 3633296
Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868
||| || ||| ||| || | | | || ||||| || |||| || ||||| |
Sbjct 3633295 TCTCGTACTTCTCATAAAGAGCAACGAACTCGTCACCATAGACATCATCCAAGCCAGGAC 3633236
Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928
||| || ||| || | || | |||| | ||| | | || | || ||| || | |
Sbjct 3633235 ACTCATTGGGACACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGT 3633176
Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTC 155987
|| ||| | ||| |||| | || || || |||| || | | |||||||||
Sbjct 3633175 CAGGAATCCATAGAGCCAAGAACAAATCTCTGGCACG-GACTTCTTCCTTACCGTGATTC 3633117
Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047
|| || ||||| | |||||| || |||| ||| ||||||| ||||| ||||||
Sbjct 3633116 TTTCGCAGCTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAA 3633057
Query 156048 CTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104
||| | ||| ||||||||||| ||||| | |||||| |||||||| || |
Sbjct 3633056 GCACCTGGTCGCTTATTACCACCCTGATCAACATATCTAGCAGTATTATTGAAAACTCTC 3632997
Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164
| ||| |||| |||||| || || || || || ||||| ||| | || |||| |
Sbjct 3632996 AACATGGGAACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCA 3632937
Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224
|| | |||||||| | | ||||||||||| | | || ||||| || || |
Sbjct 3632936 CGGATATTATGAACACTCAAACCAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTC 3632877
Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCACGA 156283
|| | ||||| | |||| || || |||||||| || | ||| | | ||| |||| ||
Sbjct 3632876 TTCAAAGTATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAACCAAGA-AGCAAGA 3632818
Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343
| |||||| || || ||||| ||| | || || || | ||||| |||||||
Sbjct 3632817 GGACATTTGAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGCATGTGTAAAATA 3632758
Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACA 156403
||| | |||||| || | |||||| || | ||| | || ||| || |||||||
Sbjct 3632757 CTTTTGAGACATGTAGTTGTATGTTTCAATGGCCTTGGTGATATCAGAACCATGAATACC 3632698
Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463
| || || ||||| ||| || || || | ||| | || |||| ||| ||
Sbjct 3632697 AACAGCTACTCTCATGATCATGTGTTGGGGTCTCTCGGCGATTTTACCATTAATCTTGAG 3632638
Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAA-TCAAACAGAAAATCACGGTTGT 156522
| ||| | | ||||| ||| || || ||||| ||| | || || |||||||| | |
Sbjct 3632637 CAAGTACGATCTTTCCAAAGTCTTGAAACCGAAGTAATTGTAAGAG-AAATCACGATCAT 3632579
Query 156523 AATCAAT 156529
|| ||||
Sbjct 3632578 AAACAAT 3632572
Score = 123 bits (136), Expect = 7e-23
Identities = 498/771 (65%), Gaps = 15/771 (2%)
Strand=Plus/Plus
Query 133069 TAATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACA 133128
||| || |||||| ||||||| |||||| || | ||||||||||| ||||| || |
Sbjct 3219426 TAACAGATTTGTTCTGTTCCCTATTAAGTACCATGAGATTTGGCAAATGTACAAGCAGGC 3219485
Query 133129 GCAAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC-CAGCCCACTGGG 133187
| | || || |||||| | ||| | |||||| || ||| ||| ||||||
Sbjct 3219486 TGAGGCTTCTTTCTGGACTGCTGAAGAAATTGATTTAGGAAAGGACATCAGTG-ACTGGG 3219544
Query 133188 AAGCCC---TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTG 133244
| || ||| || ||||| | | |||||| ||| | | || || |||||||
Sbjct 3219545 AGCACCGTCTTAATGATGATGAGAGATTTTTTATCTCTCGTGTCCTTGCATTCTTTGCTG 3219604
Query 133245 CGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGG 133304
| |||||||| || || || || | | | || || ||||||||| |
Sbjct 3219605 CTTCAGATGGTATCGTCAACGAGAACTTGGTTGAAAGATTCTCTGGTGAAGTTCAAATTC 3219664
Query 133305 CCGAAGCCC-GTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACA 133363
|||| || ||| ||||| || | || ||| |||||| || |||||| | ||
Sbjct 3219665 CCGAGGCAAAGTGT-TTTTACGGTTTCCAAATTATGATGGAGAACATCCATGCAGAGACC 3219723
Query 133364 TATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGC--ACAAACTATTCA 133421
|| || || ||||| ||||| ||||| ||| | | || || || | |||
Sbjct 3219724 TACTCATTACTTATTGACACTTATATCAAGGATGC--TAAGGAGGCTAACTTTTTGTTCC 3219781
Query 133422 ACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCC 133481
| || ||| | | |||| |||||||| ||||| ||||||||||| | ||||||
Sbjct 3219782 ATGCTATTGACAATATTCCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTG 3219841
Query 133482 AGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttt 133541
|| | | | | ||||||| ||||||||||| ||||||| || ||||| || |
Sbjct 3219842 CTGATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCT 3219901
Query 133542 ttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGAC 133601
| ||| ||| | || | ||| || ||| | || |||||||| | | ||||| |
Sbjct 3219902 TCTTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTC 3219961
Query 133602 TGTGTTTTTCTAACGAACTTATTTCAAGGGACG-AGGCACTTCACACCGAATTTGCCGTT 133660
|| || || |||||| | || || | || | ||||| | |||||||| ||||| |
Sbjct 3219962 TGACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCA-TGCACACCGATTTTGCTTGT 3220020
Query 133661 TTACTTCACTCTAAATTAGAGCGAC-CACTCAAAAAGAATAAGATTGAAGAAATTATTAG 133719
|| ||| | | | | | || || || ||| | |||||| | ||||| |
Sbjct 3220021 TTGCTTTTCGGCCACCTTG-TCAACAGACCTAAGAAGTCTGTTATTGAAAAGATTATCAC 3220079
Query 133720 AGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGG 133779
||||| ||| ||||| || || | | | |||| |||| || || | | ||
Sbjct 3220080 TGAAGCCGTTATTATTGAAAAGGAGTTCTTGACTGATGCTTTGCCATGTAGTCTTTTGGG 3220139
Query 133780 TATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATT 133830
||||||| ||| ||| | || ||||| ||||| |||||||||||
Sbjct 3220140 AATGAATGCCAAGCTTATGTGCCAATACATTGAGTTTGTTGCTGACAGATT 3220190
Score = 104 bits (114), Expect = 7e-17
Identities = 126/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGT-CATATAGCCG 251465
|||||||||||| | |||||||||||| | | | ||||| || || | |||| || ||
Sbjct 2109378 ATAAGACCACACACACCACACACATGGACTCGGAACGCATCTGAAGCCTCCATA-AGACG 2109436
Query 251466 ACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525
|||| ||| || || ||||| | ||||||||||||||| ||||| || |||||
Sbjct 2109437 CTCCTTCAAGAACGCAGCAGCTCCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAA 2109496
Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574
||| | ||||||||| || | ||||| ||| | || || | ||| |||
Sbjct 2109497 ACGCAAACCACCATCACGCGATCTACCTTCGACTGGTTGTCTAGTAAGA 2109545
Score = 89.7 bits (98), Expect = 2e-12
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331
||| ||||||||||||||||||||||||||||| || || | ||||| ||||||||||
Sbjct 2109455 AGCTCCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAAACCACCATCACG 2109514
Query 233332 TGACCTACCCTGGACTGTTTGACGAGT 233358
|| ||||| | ||||| ||| | |||
Sbjct 2109515 CGATCTACCTTCGACTGGTTGTCTAGT 2109541
Score = 89.7 bits (98), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
||||| || | || ||||||||||||| | || || || ||| |||| ||||| |||
Sbjct 3752598 AGAATCTCCTTAAGACGGGGAACACCAAGCGTAACATT---CTTAGACGACACACCGGCA 3752654
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|||| || || |||| || | || |||| || |||||||||||||| || ||||
Sbjct 3752655 TAGTGAAATGTGTTCAACGTCATCTGTGTAGCAGGTTCACCAATACTTTGAGCAGCAACA 3752714
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||||| || ||
Sbjct 3752715 ACGCCAACCATTTCACCAGG 3752734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817524569348
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