Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 228 2e-54 seq2 221 4e-52 >seq1 Length=5930846 Score = 228 bits (252), Expect = 2e-54 Identities = 607/916 (66%), Gaps = 11/916 (1%) Strand=Plus/Plus Query 155592 GACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCA 155650 || ||||| ||||| || || ||||||| | | | || ||| | | |||||| ||| Sbjct 4966724 GATGCCAGGTTACACACAGCGGTCTCCTGTTTGGACGA-GTACTGGATAATCTCCGTGCA 4966782 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 || || ||| || || || || | ||| || || || ||||| |||||||| | ||| Sbjct 4966783 TAGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGATTTTCTGTTACAGGAATC 4966842 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 ||||| || ||| |||| ||||| ||||| | || | || | ||| | |||||| Sbjct 4966843 TTTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTCTAAAATGGCAAACCAGAG 4966902 Query 155771 GTCACGGGCATTAAT-TTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCG 155829 | |||| | | |||| | |||| ||| |||||| | | |||| | Sbjct 4966903 CTTCTGGGCTCTGACCTTGCGAACA-TGTCTGTTTTCTTTTTCATATCTTTTGTACAAAG 4966961 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 || | | || |||||||| ||| | ||||| | ||| || |||| | Sbjct 4966962 TTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGCTTCATCAGGTGAAAATAAGC 4967021 Query 155890 ACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGA 155949 |||| || || | |||| | ||| || | |||| ||||| |||||| | Sbjct 4967022 ACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATCAGGGATCCAAAGAGCATAAA 4967081 Query 155950 AAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCT 156009 | | ||| | || || | || || | ||||||||| || |||| |||||| || || Sbjct 4967082 ACAAGTCTCGAGCTCTTAATTCTTCTTTGCCGTGATTTTTTCGTAACTCTAAAAACTCTA 4967141 Query 156010 CAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCAC 156066 |||||| || || |||| || ||||||||| ||| || ||| |||| Sbjct 4967142 ATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAGCACCTGGTCTTTTGTTACCAC 4967201 Query 156067 CCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGG 156126 ||||||||||||||| ||||| || || || || | |||||| || | ||| ||||||| Sbjct 4967202 CCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTAGCATCGGCACAATTCCATTGG 4967261 Query 156127 AAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTC 156186 | ||||||| | || ||| | | ||| | || || | ||||||||| || || | Sbjct 4967262 AGCTGCCATTACTCCCAGCAATGTAAGCACCCGTCGACCGGATATTATGAATGTGGAGAC 4967321 Query 156187 CAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTT 156246 |||| ||||||| ||| || || |||||| || |||| |||| | |||| |||| Sbjct 4967322 CAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGTCTTTTAGGGTATCGTAAATGCCTT 4967381 Query 156247 CAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTC 156306 | || ||||| |||| ||| | || | |||| || ||||||||| || || | Sbjct 4967382 CTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGGACGATAATTGAGGATTAGGCGTGC 4967441 Query 156307 CAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCG-TAT 156365 ||| |||||||||||| |||| ||||| | ||||| || | ||||| |||| | ||| Sbjct 4967442 CAGAGTTGAATAGTGTTGGTGACGCATGGGTGAAATATTTTTCCGACAT-TAATTGATAT 4967500 Query 156366 GTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATA 156425 ||||| | | | | || | || || ||||||| | | || ||||| |||| Sbjct 4967501 GTCTCGATGACCCTATCTATATCTCTGCCATGAATACCCACCGCCACTCTCATTAACATC 4967560 Query 156426 TGCTGAGGACGCTCTACAATCACT-CCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGT 156484 || || || | || | || | || |||| ||| || ||||| | | ||| || || Sbjct 4967561 TGTTGCGGCCTTTCAATAA-CTCTGCCATACATTTTAAGCAGGTACGATCTTTCGAGCGT 4967619 Query 156485 TTTAAACCCGAAATAA 156500 || || ||||||||| Sbjct 4967620 CTTTAATCCGAAATAA 4967635 Score = 100 bits (110), Expect = 8e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||||| ||||| | ||||||||||||||| ||||| | ||| |||||||||||| Sbjct 3952305 AGCACCGTATGCAATTACACAATCACGTTCCATCTCACCGAGACGAAGACCACCATCACG 3952364 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 || ||||| | | | ||||||||| | |||| ||| ||||| | ||| || Sbjct 3952365 GGATCTACCTTCGGTAGGTTGACGAGTCAGTACAGCTCTGGGACCTCTTGGACGGGCATG 3952424 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAA 233431 |||||||| ||||||| ||||| || | ||||||| Sbjct 3952425 CATTTTATCCATAACCATGTGCTTAAGCTTTTGATAATAA 3952464 Score = 95.1 bits (104), Expect = 4e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || ||||||| || ||| | ||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3952303 GAAGCACCGTATGCAATTACACAATCACGTTCCATCTCACCGAGACGAAGACCACCATCA 3952362 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || | ||||| |||| ||| |||||||| || Sbjct 3952363 CGGGATCTACCTTCGGTAGGTTGACGAGTCAG 3952394 >seq2 Length=4956242 Score = 221 bits (244), Expect = 4e-52 Identities = 600/907 (66%), Gaps = 11/907 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || ||||| |||||||||| ||| || |||||| || || || || | ||||| Sbjct 3633474 GTACTCAACAATTTCACAGCACAAGTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTT 3633415 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || || |||||||||||||| || || ||| ||||| | || ||||| | || || Sbjct 3633414 ACTCTTGCTATTACAAGCATCCTTATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGC 3633355 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATT-TGCTTGTTGTATCTGCCTTCCG 155808 || ||||| ||| || | |||| || || | ||| | | ||| |||||| Sbjct 3633354 TTCGAGAATAGCATACCACAGCTTTTGGGCCTTGATGGTTCTTCT-GCCTCTACCTTCCT 3633296 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 ||| || ||| ||| || | | | || ||||| || |||| || ||||| | Sbjct 3633295 TCTCGTACTTCTCATAAAGAGCAACGAACTCGTCACCATAGACATCATCCAAGCCAGGAC 3633236 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928 ||| || ||| || | || | |||| | ||| | | || | || ||| || | | Sbjct 3633235 ACTCATTGGGACACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGT 3633176 Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTC 155987 || ||| | ||| |||| | || || || |||| || | | ||||||||| Sbjct 3633175 CAGGAATCCATAGAGCCAAGAACAAATCTCTGGCACG-GACTTCTTCCTTACCGTGATTC 3633117 Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047 || || ||||| | |||||| || |||| ||| ||||||| ||||| |||||| Sbjct 3633116 TTTCGCAGCTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAA 3633057 Query 156048 CTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||| | ||| ||||||||||| ||||| | |||||| |||||||| || | Sbjct 3633056 GCACCTGGTCGCTTATTACCACCCTGATCAACATATCTAGCAGTATTATTGAAAACTCTC 3632997 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 | ||| |||| |||||| || || || || || ||||| ||| | || |||| | Sbjct 3632996 AACATGGGAACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCA 3632937 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 || | |||||||| | | ||||||||||| | | || ||||| || || | Sbjct 3632936 CGGATATTATGAACACTCAAACCAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTC 3632877 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCACGA 156283 || | ||||| | |||| || || |||||||| || | ||| | | ||| |||| || Sbjct 3632876 TTCAAAGTATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAACCAAGA-AGCAAGA 3632818 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | |||||| || || ||||| ||| | || || || | ||||| ||||||| Sbjct 3632817 GGACATTTGAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGCATGTGTAAAATA 3632758 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACA 156403 ||| | |||||| || | |||||| || | ||| | || ||| || ||||||| Sbjct 3632757 CTTTTGAGACATGTAGTTGTATGTTTCAATGGCCTTGGTGATATCAGAACCATGAATACC 3632698 Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAG 156463 | || || ||||| ||| || || || | ||| | || |||| ||| || Sbjct 3632697 AACAGCTACTCTCATGATCATGTGTTGGGGTCTCTCGGCGATTTTACCATTAATCTTGAG 3632638 Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAA-TCAAACAGAAAATCACGGTTGT 156522 | ||| | | ||||| ||| || || ||||| ||| | || || |||||||| | | Sbjct 3632637 CAAGTACGATCTTTCCAAAGTCTTGAAACCGAAGTAATTGTAAGAG-AAATCACGATCAT 3632579 Query 156523 AATCAAT 156529 || |||| Sbjct 3632578 AAACAAT 3632572 Score = 123 bits (136), Expect = 7e-23 Identities = 498/771 (65%), Gaps = 15/771 (2%) Strand=Plus/Plus Query 133069 TAATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACA 133128 ||| || |||||| ||||||| |||||| || | ||||||||||| ||||| || | Sbjct 3219426 TAACAGATTTGTTCTGTTCCCTATTAAGTACCATGAGATTTGGCAAATGTACAAGCAGGC 3219485 Query 133129 GCAAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC-CAGCCCACTGGG 133187 | | || || |||||| | ||| | |||||| || ||| ||| |||||| Sbjct 3219486 TGAGGCTTCTTTCTGGACTGCTGAAGAAATTGATTTAGGAAAGGACATCAGTG-ACTGGG 3219544 Query 133188 AAGCCC---TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTG 133244 | || ||| || ||||| | | |||||| ||| | | || || ||||||| Sbjct 3219545 AGCACCGTCTTAATGATGATGAGAGATTTTTTATCTCTCGTGTCCTTGCATTCTTTGCTG 3219604 Query 133245 CGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGG 133304 | |||||||| || || || || | | | || || ||||||||| | Sbjct 3219605 CTTCAGATGGTATCGTCAACGAGAACTTGGTTGAAAGATTCTCTGGTGAAGTTCAAATTC 3219664 Query 133305 CCGAAGCCC-GTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACA 133363 |||| || ||| ||||| || | || ||| |||||| || |||||| | || Sbjct 3219665 CCGAGGCAAAGTGT-TTTTACGGTTTCCAAATTATGATGGAGAACATCCATGCAGAGACC 3219723 Query 133364 TATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGC--ACAAACTATTCA 133421 || || || ||||| ||||| ||||| ||| | | || || || | ||| Sbjct 3219724 TACTCATTACTTATTGACACTTATATCAAGGATGC--TAAGGAGGCTAACTTTTTGTTCC 3219781 Query 133422 ACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCC 133481 | || ||| | | |||| |||||||| ||||| ||||||||||| | |||||| Sbjct 3219782 ATGCTATTGACAATATTCCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTG 3219841 Query 133482 AGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttt 133541 || | | | | ||||||| ||||||||||| ||||||| || ||||| || | Sbjct 3219842 CTGATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCT 3219901 Query 133542 ttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGAC 133601 | ||| ||| | || | ||| || ||| | || |||||||| | | ||||| | Sbjct 3219902 TCTTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTC 3219961 Query 133602 TGTGTTTTTCTAACGAACTTATTTCAAGGGACG-AGGCACTTCACACCGAATTTGCCGTT 133660 || || || |||||| | || || | || | ||||| | |||||||| ||||| | Sbjct 3219962 TGACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCA-TGCACACCGATTTTGCTTGT 3220020 Query 133661 TTACTTCACTCTAAATTAGAGCGAC-CACTCAAAAAGAATAAGATTGAAGAAATTATTAG 133719 || ||| | | | | | || || || ||| | |||||| | ||||| | Sbjct 3220021 TTGCTTTTCGGCCACCTTG-TCAACAGACCTAAGAAGTCTGTTATTGAAAAGATTATCAC 3220079 Query 133720 AGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGG 133779 ||||| ||| ||||| || || | | | |||| |||| || || | | || Sbjct 3220080 TGAAGCCGTTATTATTGAAAAGGAGTTCTTGACTGATGCTTTGCCATGTAGTCTTTTGGG 3220139 Query 133780 TATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATT 133830 ||||||| ||| ||| | || ||||| ||||| ||||||||||| Sbjct 3220140 AATGAATGCCAAGCTTATGTGCCAATACATTGAGTTTGTTGCTGACAGATT 3220190 Score = 104 bits (114), Expect = 7e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGT-CATATAGCCG 251465 |||||||||||| | |||||||||||| | | | ||||| || || | |||| || || Sbjct 2109378 ATAAGACCACACACACCACACACATGGACTCGGAACGCATCTGAAGCCTCCATA-AGACG 2109436 Query 251466 ACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525 |||| ||| || || ||||| | ||||||||||||||| ||||| || ||||| Sbjct 2109437 CTCCTTCAAGAACGCAGCAGCTCCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAA 2109496 Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 ||| | ||||||||| || | ||||| ||| | || || | ||| ||| Sbjct 2109497 ACGCAAACCACCATCACGCGATCTACCTTCGACTGGTTGTCTAGTAAGA 2109545 Score = 89.7 bits (98), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 ||| ||||||||||||||||||||||||||||| || || | ||||| |||||||||| Sbjct 2109455 AGCTCCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAAACCACCATCACG 2109514 Query 233332 TGACCTACCCTGGACTGTTTGACGAGT 233358 || ||||| | ||||| ||| | ||| Sbjct 2109515 CGATCTACCTTCGACTGGTTGTCTAGT 2109541 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 ||||| || | || ||||||||||||| | || || || ||| |||| ||||| ||| Sbjct 3752598 AGAATCTCCTTAAGACGGGGAACACCAAGCGTAACATT---CTTAGACGACACACCGGCA 3752654 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 |||| || || |||| || | || |||| || |||||||||||||| || |||| Sbjct 3752655 TAGTGAAATGTGTTCAACGTCATCTGTGTAGCAGGTTCACCAATACTTTGAGCAGCAACA 3752714 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||||| || || Sbjct 3752715 ACGCCAACCATTTCACCAGG 3752734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817524569348