Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3 125 6e-24
seq2 125 6e-24
seq1 84.2 2e-11
>seq3
Length=2773601
Score = 125 bits (138), Expect = 6e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777
|| || || || ||||| || || || ||||| || || | ||||||| | || |||
Sbjct 1977487 AAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATTGACAAC 1977546
Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837
| || || || |||||||||||| || ||||| || || |||||||||||| | |||||
Sbjct 1977547 GTCAAGACCAA-GATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCTTATCTT 1977605
Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897
||||| || || || |||||| |||| | | || || || |||||||||||||| ||
Sbjct 1977606 CGCCGGTAAGCAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAAGGAGTC 1977665
Query 24898 GACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || ||| | || | || ||| | || ||
Sbjct 1977666 GACTCTCCACCTTGTCCTCCGTTTGAGAGGTGG 1977698
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || || ||||| || ||||| || ||||| || || |
Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || || | ||| || ||| || |||||||| ||||| || ||||| || ||
Sbjct 154181 GATACTATTGATAATGTTAAGACCAAA-ATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154239
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|||| | | || ||||| || || || | || ||| |||| | |||| ||||| ||
Sbjct 154240 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154299
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||||||||| || || ||||||||
Sbjct 154300 CATTCAAAAGGAATCCACTCTCCACTTGGT 154329
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || | || ||||| |||||||| |||||||| ||| || |
Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || |||| || || || ||| |||||||| || || || ||||| || ||
Sbjct 154637 GATACTATTGATAACGTCAAGACCAA-GATTCAAGACAAGGAGGGTATTCCTCCAGACCA 154695
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| |||||||| || || || || || || |||||| | | | || || || ||
Sbjct 154696 ACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAA 154755
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||||||||| || || ||||| ||
Sbjct 154756 CATTCAAAAGGAATCCACTCTCCACTTAGT 154785
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || | || ||||| |||||||| |||||||| || || |
Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || |||| || || || ||| |||||||| ||||| || ||||| || ||
Sbjct 154865 GATACTATCGACAACGTCAAGACTAA-GATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154923
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| |||||||| || || || || || |||| || | | | || || |||||
Sbjct 154924 ACAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAA 154983
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||| ||||||||||| || || ||||||||
Sbjct 154984 CATCCAAAAGGAATCTACTCTCCACTTGGT 155013
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||| ||||| | || || || || ||||| || || || || || || || ||
Sbjct 153890 ACAATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCC 153949
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | || | || || ||||| |||||||| ||||| || ||||| ||
Sbjct 153950 TCTGATACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 154009
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|||||| | | || ||||| || || || | || ||| |||| | |||| |||||
Sbjct 154010 CAACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTAC 154069
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912
|| |||||||||||||| || || ||||||||
Sbjct 154070 AATATTCAAAAGGAATCTACTCTTCACTTGGT 154101
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | || || || || || || |||||||| || || |
Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || || | ||| || || |||||||||||| || || || ||||| || ||
Sbjct 154409 GATACTATTGATAATGTTAAGACTAA-GATCCAAGACAAGGAGGGTATTCCTCCAGACCA 154467
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|||| | | |||||||| || || || || |||||| | | | || || || ||
Sbjct 154468 ACAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAA 154527
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||||||||||||||| || || ||||| ||
Sbjct 154528 CATTCAAAAGGAATCTACTCTTCACTTAGT 154557
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || || ||||| ||||| |||||||| || || | |
Sbjct 155033 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACGCTCGAGGTCGAGTCTTCG 155092
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || || || || |||
Sbjct 155093 GACACCATTGATAATGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 155152
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | | ||||||||||| || ||||| || || | | | || || || |||
Sbjct 155153 CAAAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGTACTCTCTCCGACTACAAC 155212
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || ||||| ||||| || ||||||||
Sbjct 155213 ATCCAGAAGGAGTCGACCCTCCACTTGGT 155241
>seq2
Length=4956242
Score = 125 bits (138), Expect = 6e-24
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|||||||| || || | || || || |||||||| ||||| || || || || || |
Sbjct 2346129 ACGATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTCT 2346070
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
||||||| | || | || || |||||||||||||| || ||||| || || |||
Sbjct 2346069 TCCGACACTATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGAT 2346010
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|||||||||||||||||||| || || || || |||||| | | | | || || ||
Sbjct 2346009 CAACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTAC 2345950
Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907
||||| |||||||| || || || |||
Sbjct 2345949 AACATCCAAAAGGAGTCTACTCTCCAC 2345923
>seq1
Length=5930846
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215
|| |||||||| | ||| | |||||| ||||| |||||| | |||||||||||||||
Sbjct 4966796 TTAATCGTACCAAGATTATTTTGATTTGATTTTCTGTTACAGGAATCTTTGTAAAGCATG 4966855
Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251
| || || ||||| || ||||| ||||||| ||||
Sbjct 4966856 AATGGAGTTCCAGTCTCGACTTGAGTCTCTAAAATG 4966891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897577505120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |