Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-17 seq2 93.3 7e-13 >seq1 Length=5930846 Score = 107 bits (118), Expect = 3e-17 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| || | |||||| | |||||||| || ||||||||||| | ||||| | || Sbjct 274992 CTCTTCGAAATTATCCTCACTGCCAACTATCTTGACATCAAGCCTTTGCTCGAAGTTGGA 275051 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| || ||||| | |||||||||||| || ||||| ||| | ||||||||| Sbjct 275052 TGCAAGACTGTAGCCAATATGATCAAGGGCAAGAGCCCTGAGGATATCAGAAAGACCTTT 275111 Query 2035749 AACATCA 2035755 ||||||| Sbjct 275112 AACATCA 275118 Score = 91.5 bits (100), Expect = 2e-12 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || |||||| || ||||| |||||| |||||| || ||| | | Sbjct 2909633 TGTACTTGGTGACAGCACGGGTACCTTCAGAGACAGCGTGCTTGGCCAACTCACCGGGGA 2909574 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || | ||||| || |||||||| || | | || || | |||||| || Sbjct 2909573 GGATAAGTCTGACGGCAGTTTGGATCTCACGAGAAGCAATGGTACTCTTCTTGTT-GTAA 2909515 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| |||||| || ||| || || | || ||||||||||| |||||| Sbjct 2909514 GCAGCCAACTTAGAGGCCTCAGTAGCGACACGCTCAAAGATATCGTTGACAAAAGAGTTC 2909455 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| | | | || || || ||| || || ||||| || |||||| Sbjct 2909454 ATGATAGACATGGCACGGGTAGAAATACCGGTGTCAGGATGGGTTTGCTTAAGAACCTTG 2909395 Query 1485709 TA 1485710 || Sbjct 2909394 TA 2909393 >seq2 Length=4956242 Score = 93.3 bits (102), Expect = 7e-13 Identities = 228/338 (67%), Gaps = 21/338 (6%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCG-TTGCTAAAG-CAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| || || |||||||||| ||| || | |||| || |||||||| || |||| Sbjct 3219998 CCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGA--CCAGGCATGAGTCCACGCT 3219941 Query 794399 TCTTGAGCCAAAAGA---TGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGG 794455 |||| | ||| |||| ||||| || || ||||| ||||| ||||| ||||| | Sbjct 3219940 TCTTCAACCAGAAGATACTGGCA---AATGATCCAGAGAAGAAGATACCCTCAACGGCAG 3219884 Query 794456 CAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCG 794515 ||||| | ||||| ||||| ||||||||| | | || | ||||| | | Sbjct 3219883 CAAAGGCAACGAGACGCTCAGCAAAAGTGGACTG---ATCATCAGCAATCCATCGGAGAG 3219827 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCG----AAAGAGGTGG 794571 |||| || ||||| ||| | | | || | |||| || || | ||| || | | Sbjct 3219826 CCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCATGGAACAAAAAGTTAG 3219767 Query 794572 TCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631 ||| || | ||||||| || ||||| || || | ||||||||||||| ||| Sbjct 3219766 -CCTCCT---TAGCATCCTTGATATAAGTGTCAATAAGTAATGAGTAGGTCTCTGCATGG 3219711 Query 794632 ATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAGTT 794669 ||||| || || || ||||| || ||||| || || Sbjct 3219710 ATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTT 3219673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245974501756