Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 1e-19
seq2 95.1 8e-15
>seq3
Length=2773601
Score = 111 bits (122), Expect = 1e-19
Identities = 143/195 (73%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846
||||| |||||||| ||||| || || | || |||| || |||||||| || || |||
Sbjct 154539 TCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAG 154480
Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906
|| |||| ||| |||||| | || | ||||||||||| | || || || || ||
Sbjct 154479 ATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTAGTCTTAAC--AT 154422
Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962
|||| || ||| || |||||| || | ||| ||||||||||| || | ||||||
Sbjct 154421 --TATCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTT 154364
Query 34963 TACAAAGATCTGCAT 34977
|||||||| |||||
Sbjct 154363 GACAAAGATTTGCAT 154349
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| | ||||| ||||| | || |||||| |||||||| ||||| ||
Sbjct 1977698 CCACCTCTCAAACGGAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAA 1977639
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| | | |||| || |||||||| ||||||||||| || ||||| || ||| | ||
Sbjct 1977638 AGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGA 1977579
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || |||||| | || | || | ||||||
Sbjct 1977578 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACC 1977519
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAA 34968
|| | ||| |||||||| || || |||||||| || ||
Sbjct 1977518 TCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 1977481
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| ||||||||| ||||| ||||| || || | || | ||
Sbjct 155244 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCT 155185
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||| ||||| |||| ||| |||||| | || | |||||||||||
Sbjct 155184 TCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 155125
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || |||| || || | |||||| || | || ||
Sbjct 155124 TGGATCTTGGTCTTGAC--AT--TATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGAT 155069
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || ||||||||||| || ||||| |||||
Sbjct 155068 AGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 155033
Score = 98.7 bits (108), Expect = 6e-16
Identities = 155/217 (71%), Gaps = 10/217 (5%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||| |||||||| || || || | | | | ||||
Sbjct 154332 AGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCT 154273
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| | |||||| || || || || |||| ||| |||||| | || | || ||||||||
Sbjct 154272 TCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTC- 154214
Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
|| | |||| || || || || |||| || ||| || ||| || |||| || |
Sbjct 154213 TTGAATTTTGGTCTTAAC--AT--TATCAATAGTATCAGAGGACTCAACTTCAAGAGTAA 154158
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||| || |||||||||||||| ||||| |||||
Sbjct 154157 TGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/217 (71%), Gaps = 10/217 (5%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| || ||||| ||||| || || || || | | | | ||||
Sbjct 154104 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCT 154045
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| | |||||| || || || || |||| ||| |||||| | || | || ||||||||
Sbjct 154044 TCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTC- 153986
Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
|| | | || || ||||| || | ||||| ||| || ||| || |||| || |
Sbjct 153985 TTGAATCTTGGTCTTGAC--AT--TGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGA 153930
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||| || |||||||||||||| ||||| |||||
Sbjct 153929 TGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 153893
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| | ||| | ||| ||||| |||||||| ||||| || || | || ||||
Sbjct 154788 AGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCC 154729
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| || ||||| |||| || || |||||| | || | |||||||||||
Sbjct 154728 TCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTC- 154670
Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
|| | | || || |||||| | || | ||| || || || || | || || ||
Sbjct 154669 TTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGT 154610
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || || | ||||| || ||||| |||||
Sbjct 154609 CTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | || ||||| || ||||||||||| || || | || | ||
Sbjct 155016 AGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCT 154957
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||| || ||||| |||| || || |||||| | || | || ||||||||
Sbjct 154956 TCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC- 154898
Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
|| | | || || |||||| | || | ||| || |||||| || | || || ||
Sbjct 154897 TTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGT 154838
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || || | ||||| || ||||| |||||
Sbjct 154837 CTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805
>seq2
Length=4956242
Score = 95.1 bits (104), Expect = 8e-15
Identities = 152/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || |||||| || ||||| ||||| || ||| | || ||||
Sbjct 2345915 AGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCC 2345974
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| || || ||||||| ||||| || ||| | || | |||||||||||
Sbjct 2345975 TCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 2346034
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||| || |||| ||| ||
Sbjct 2346035 TGGATCTTGGTCTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGAT 2346090
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || |||||||| || || || |||||
Sbjct 2346091 AGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692784122476
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