Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq2 95.1 8e-15 >seq3 Length=2773601 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| ||||| || || | || |||| || |||||||| || || ||| Sbjct 154539 TCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAG 154480 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| ||| |||||| | || | ||||||||||| | || || || || || Sbjct 154479 ATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTAGTCTTAAC--AT 154422 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 |||| || ||| || |||||| || | ||| ||||||||||| || | |||||| Sbjct 154421 --TATCAATAGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTT 154364 Query 34963 TACAAAGATCTGCAT 34977 |||||||| ||||| Sbjct 154363 GACAAAGATTTGCAT 154349 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| | ||||| ||||| | || |||||| |||||||| ||||| || Sbjct 1977698 CCACCTCTCAAACGGAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAA 1977639 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| || |||||||| ||||||||||| || ||||| || ||| | || Sbjct 1977638 AGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGA 1977579 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || |||||| | || | || | |||||| Sbjct 1977578 ATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACC 1977519 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAA 34968 || | ||| |||||||| || || |||||||| || || Sbjct 1977518 TCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 1977481 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || || | || | || Sbjct 155244 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCT 155185 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| |||| ||| |||||| | || | ||||||||||| Sbjct 155184 TCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCT 155125 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || |||| || || | |||||| || | || || Sbjct 155124 TGGATCTTGGTCTTGAC--AT--TATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGAT 155069 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| || ||||| ||||| Sbjct 155068 AGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 155033 Score = 98.7 bits (108), Expect = 6e-16 Identities = 155/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||| |||||||| || || || | | | | |||| Sbjct 154332 AGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCT 154273 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || | |||||| || || || || |||| ||| |||||| | || | || |||||||| Sbjct 154272 TCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTC- 154214 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 || | |||| || || || || |||| || ||| || ||| || |||| || | Sbjct 154213 TTGAATTTTGGTCTTAAC--AT--TATCAATAGTATCAGAGGACTCAACTTCAAGAGTAA 154158 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || |||||||||||||| ||||| ||||| Sbjct 154157 TGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||||| ||||| || || || || | | | | |||| Sbjct 154104 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCT 154045 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || | |||||| || || || || |||| ||| |||||| | || | || |||||||| Sbjct 154044 TCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTC- 153986 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 || | | || || ||||| || | ||||| ||| || ||| || |||| || | Sbjct 153985 TTGAATCTTGGTCTTGAC--AT--TGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGA 153930 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || |||||||||||||| ||||| ||||| Sbjct 153929 TGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 153893 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| | ||| | ||| ||||| |||||||| ||||| || || | || |||| Sbjct 154788 AGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCC 154729 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || ||||| |||| || || |||||| | || | ||||||||||| Sbjct 154728 TCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTC- 154670 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 || | | || || |||||| | || | ||| || || || || | || || || Sbjct 154669 TTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGT 154610 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||||| || ||||| ||||| Sbjct 154609 CTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||| || ||||||||||| || || | || | || Sbjct 155016 AGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCT 154957 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || ||||| |||| || || |||||| | || | || |||||||| Sbjct 154956 TCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC- 154898 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 || | | || || |||||| | || | ||| || |||||| || | || || || Sbjct 154897 TTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGT 154838 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||||| || ||||| ||||| Sbjct 154837 CTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805 >seq2 Length=4956242 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || |||||| || ||||| ||||| || ||| | || |||| Sbjct 2345915 AGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCC 2345974 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||||| ||||| || ||| | || | ||||||||||| Sbjct 2345975 TCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 2346034 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 2346035 TGGATCTTGGTCTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGAT 2346090 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || || || ||||| Sbjct 2346091 AGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692784122476