Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq3 136 3e-27
>seq3
Length=2773601
Score = 136 bits (150), Expect = 3e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || || ||||| || ||||| ||||||||||| || || | || || |||
Sbjct 154564 ACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACC 154505
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| |||||||| || |||||| | || | |||||| || || || ||||||||||| ||
Sbjct 154504 ATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATACCCTCCTT 154445
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| || || || || ||| | || | ||| ||||| || ||||| || || |
Sbjct 154444 GTCTTG-GATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGACTTCGAGGGTGA 154386
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || ||||| ||||| || ||||| || |||||
Sbjct 154385 TGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349
Score = 132 bits (146), Expect = 4e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| || || |||||||| ||||||||||| ||||| | | ||| |
Sbjct 154336 ACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCC 154277
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | ||| || |||||| | || | |||||| || || || |||||||| || ||
Sbjct 154276 ATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTT 154217
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| |||||| || || ||| | || | ||| ||||| || ||||||||||| |
Sbjct 154216 GTCTTG-AATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAA 154158
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || ||||| | ||| || || || || |||||
Sbjct 154157 TGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || || || || |||||||| ||||||||||| || || | | || ||
Sbjct 154792 ACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCC 154733
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| |||||||| || ||||| | ||||| | || || || || ||||||||||| ||
Sbjct 154732 ATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTT 154673
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || || ||||| | || | ||| ||||| ||| ||||| ||||| |
Sbjct 154672 GTCTTG-AATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAA 154614
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| || ||||| || || || || || || |||||
Sbjct 154613 TAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || |||||||| || || | || || || || || ||||||||||| || || | |
Sbjct 1977698 CCACCTCTCAAACGGAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAA 1977639
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| | ||| |||||||| || || || | || | | ||| ||||| || |||
Sbjct 1977638 AGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGA 1977579
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| ||||| |||||||| || || || ||||| | || | ||||| ||| || ||
Sbjct 1977578 ATTCCCTCCTTGTCTTG-GATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGAC 1977520
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777
|| || || || || || ||||| | ||| || || ||
Sbjct 1977519 CTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 1977481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385219181220564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |