Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq3 336 2e-86
seq1 199 3e-45
seq4 105 5e-17
>seq3
Length=2773601
Score = 336 bits (372), Expect = 2e-86
Identities = 974/1476 (66%), Gaps = 26/1476 (2%)
Strand=Plus/Minus
Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476
|| ||| | |||| || || | ||||||||||| || | || || ||||| || |||
Sbjct 1435738 TTCTCAACAGCAGAGACGTTCAAGATACCATTGGCGTCAATGTCGAAAGTGACCTCGATT 1435679
Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536
||||| || || | |||| || || || || | | || | || || ||
Sbjct 1435678 TGAGGAACACCACGAGGAGCGGGAGGAATACCAGTGAGCTCGAACTTACCAAGCAAGTTG 1435619
Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596
|| || || || | || ||||||||||||| ||| || || | | ||| ||
Sbjct 1435618 TTGTCCTTGGTCTTGGTACGCTCACCCTCGAAAACTTGAATGAGGACACCGGGTTGGTTG 1435559
Query 281597 TCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 281655
|| | ||| || | || | ||| || || || |||||| || | |||||| ||
Sbjct 1435558 TCAGCATAGGTGGAGAAGA-TCTCAGACTTCTTGGTAGGAATGGTAGAGTTTCTGGGGAT 1435500
Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC-AA 281714
| |||||||| | ||||||||| || || | ||||||||||||||||| |||||| ||
Sbjct 1435499 GAGCTTGGTCATGACACCACCAGCAGTCTCGATACCAAGAGAAAGAGGAGCGACATCCAA 1435440
Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774
| | |||| | |||| || | ||| | |||| ||||||||| ||||||| ||
Sbjct 1435439 CAACAACAAG-TCTTGAGTCTTGGAAGAAGTGTCACCAGAAAGAATAGCGGCTTGAACAG 1435381
Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834
| |||||||| ||||| || ||||| || || | | | || | | ||||| ||||
Sbjct 1435380 CGGCACCATAGGCAACGGCCTCATCGGGGTTGATGGATCTGTTGGGCTCCTTACCGTTGA 1435321
Query 281835 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894
| || | |||| ||| | | ||||| || ||||| | || || ||||| | ||||
Sbjct 1435320 AGAAGTCGGAAACAAGCTTTTGAACCTTGGGGATACGGGTAGAACCACCAACAAGGACAA 1435261
Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954
| || | || || || || | || || || | ||| || ||||| || || |
Sbjct 1435260 TCTCGTTAACAGAAGACTTGTCAATCTTGGAGTCACGGAGAACCTTCTCAACAGGCTCGA 1435201
Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014
|| ||| ||||| ||| ||| | || |||||| |||| | || | || |
Sbjct 1435200 TGGTAGATCTGAACAAATCTTGACACAACTCCTCGAATCTAGCACGGGTGATAGAAGTGT 1435141
Query 282015 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 282074
||||||| || ||| ||||||| || | ||| || | |||||||| |||||||| |
Sbjct 1435140 AGAAATCAATACCCTCGTACAAAGAGTCGATTTCGATAGAAGTTTGAGCAGAAGAAGACA 1435081
Query 282075 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGA 282133
| | || ||||| ||||| || || || | | || |||| ||| || || |||
Sbjct 1435080 AAGTTCTCTTGGCACGCTCACAGGCGGTTCTCAAACGTC-TAAGAGCTCTT--TGGTTGG 1435024
Query 282134 TTCAAA--TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191
| ||| || | || | ||||||||||| || | || | | |||||||| |
Sbjct 1435023 TAGAAAGATCCTTCTTGTTCTTTCTCTTGAACTCGGCGACGAAGTGGTTGACAAGACGGT 1434964
Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251
||| ||||| ||||| ||||| | |||| || | || || | || | ||||| |
Sbjct 1434963 GATCGAAATCCTCACCACCCAAGTGGGTATCACCAGCAGTGGCCTTGACCTCGAAAATAC 1434904
Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311
| || |||| | ||| |||| |||||| || |||||||||| |||||| ||||| |
Sbjct 1434903 CGTCCTCAATGGTCAAGAGAGAAACATCGAAAGTACCACCACCCAAATCAAAGATAAGGA 1434844
Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371
| ||| | || || || || || | ||| || |||| |||||| ||||| || |
Sbjct 1434843 CGTTCTTCTCGGCATCAGACTTCTTGTCCAAACCGTAGGCAATAGCAGCGGCAGTAGGCT 1434784
Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431
| || || || | | ||| |||||||||||||| || ||||| || |||||||| |
Sbjct 1434783 CGTTGATGATACGGAGAACGTTAAGACCAGCAATAAGACCAGCATCCTTGGTGGCTTGAC 1434724
Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA- 282490
||| |||||||| || || ||||| |||||||| || || | || || | | |||
Sbjct 1434723 GTTGAGAATCGTTGAAGTAGGCAGGGACAGTAATGACAGCGT-TGCTA--ACAGTACCAC 1434667
Query 282491 -ATATAAGCGCT-TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548
| || | || || || | ||||| || | | | ||| || || |||| ||| |
Sbjct 1434666 CCAAGAAACCCTCAGCAGTCTCCTTCATCTTGGTGAGGACCATAGAAGAGATTTCTTCGG 1434607
Query 282549 GAGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607
||| | ||| ||| |||| | |||| || ||| || ||| |
Sbjct 1434606 GAGTGAAGACCTTCTCCTCACCCTTGA-ACTCGACTT--GGATTTGG-GGCTTGCCAGCC 1434551
Query 282608 TT---AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAAA 282663
|| || || || || || | | || ||||| ||| || || || ||| | |
Sbjct 1434550 TTGTCAACGACCTTGAAGGGGAAGTGCTTAATATCACTTTGGAC-CTCAGGATCAGTGTA 1434492
Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTG 282723
| ||||||||| || || || ||||| |||| ||| |||| || || | ||||||||
Sbjct 1434491 CTTTCTACCAATCAAACGCTTAGCATCGAAAACAGTGTTGGCAGGGTTCATGGCAGCTTG 1434432
Query 282724 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 282783
|| || || ||||| ||||| | | | || | || || || | || | || |||||
Sbjct 1434431 ATTCTTAGCAGCATCACCAATTAAACGCTCGGAATCGGTGAAAGCGACGAAAGAAGGAGT 1434372
Query 282784 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTAC 282843
|| | |||||||| ||||| ||||| || |||||| || |||| | ||||
Sbjct 1434371 AGTTCTGTTACCTTGGTCATTGGCAATGATCTCAACTCTATCATTGGAAAAGTGGGCTAC 1434312
Query 282844 ACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879
||| | || || || ||||||||||||| |||
Sbjct 1434311 ACAGGAGTAGGTAGTACCCAAATCAATACCAACAGC 1434276
>seq1
Length=5930846
Score = 199 bits (220), Expect = 3e-45
Identities = 458/687 (67%), Gaps = 11/687 (2%)
Strand=Plus/Minus
Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253
|| ||||| ||||| ||||| | |||| || | || || || | ||||| |||
Sbjct 2278655 TCGAAATCCTCACCACCCAAGTGGGTATCACCAGCAGTGGCCAAGACCTCGAAAACACCA 2278596
Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313
|||| ||||| | || ||||||| || |||||||||| ||| ||| ||
Sbjct 2278595 GACTCAATCGACAACAAAGAAACATCAAAAGTACCACCACCCAAATCGTAAACAA----- 2278541
Query 282314 TTCATTTCTTTGTCTTGGTTTTTA---TCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370
| |||| || | || || | ||| || |||| ||||||||||| ||
Sbjct 2278540 -TGATTTGACGCTCGCCATCAGTACGGTCCAAACCGTAGGCAATGGCAGCAGCAGTGGGC 2278482
Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430
|| |||| ||| | ||||| | | | ||||||||| | || ||||| || || |||||
Sbjct 2278481 TCGTTAACAATACGCAAAATAGTCAAACCAGCAATAGTACCGGCATCCTTGGTAGCTTGA 2278422
Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC-TTCTTTTCC 282489
| ||| | ||| || ||||| ||||| ||||||| ||| |||| || || ||||| ||
Sbjct 2278421 CGTTGAGCATCATTGAAATAAGCAGGCACAGTAACAACAGCATGAGTAACCTTCTTACCC 2278362
Query 282490 AATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549
|| |||| | || | | ||||| || | |||| ||| | |||| || ||| ||
Sbjct 2278361 AA-ATAATCCTCGGCAATCTCCTTCATCTTGCCCAAAACCATGGCGGAAACTTCTTCGGG 2278303
Query 282550 AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609
|||| | ||| ||| ||| | |||| || | || ||| | | ||
Sbjct 2278302 AGAAAAGGTCTTCTCCTCACCACCATAAGTGACTTTAACAGCAGGCTTACCATCCTTGTT 2278243
Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669
||||| ||| | || ||| || |||||| ||||||| |||| || | |
Sbjct 2278242 GATAACCTTATAAGGGAAATGCTTAATATCTCTTTGAACAGTTTGATCTGAGTACTTAAG 2278183
Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729
|||||| || || || ||| ||||||||||| | | ||| | | ||| || | ||
Sbjct 2278182 ACCAATCAAACGCTTGATATCGAAAATAGTATTAGCAGTGTTAGCAGAAGCCTGGTTCTT 2278123
Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789
|| |||||||| | || | | ||| || ||||||| ||||||||| || || | ||
Sbjct 2278122 AGCAGCATCTCCTACCAAACGCTCTTCATCAGTAAATGCAACATATGAGGGGGTGATACG 2278063
Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849
| |||||||||||| || | ||| ||||| || ||||||| | ||||| |||||
Sbjct 2278062 AAGACCTTGATCATTGGCCAAAATCTCAACCTTTCCATTTTTCATAACACCAACACATGA 2278003
Query 282850 AAAAGTTGTTCCTAAATCAATACCAAT 282876
| |||| || || | ||||||||| ||
Sbjct 2278002 ATAAGTAGTACCAAGATCAATACCGAT 2277976
Score = 147 bits (162), Expect = 2e-29
Identities = 415/634 (65%), Gaps = 9/634 (1%)
Strand=Plus/Minus
Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251
|||| ||||||| ||| ||||| | |||| || | ||||| | || ||| | |
Sbjct 2849332 TATCGAAATCTTGACCACCCAAGTGGGTATCACCGGCAGTAGCCTTGACAGTGAAGACAC 2849273
Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311
|| ||| | | ||| | ||||| || |||||||| | ||| ||||| || |
Sbjct 2849272 CACCTTGGATTTGAAGAAGGGAGACATCGAAAGTACCACCACCAAGATCGAAAATGAGAA 2849213
Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366
| | | | || | || ||| || | ||||||| || |||| |||||||||||
Sbjct 2849212 CGTGCTTCTCCTCCTC--GGTCTTACCAGCACCAAGACCGTAGGCAATGGCAGCAGCAGT 2849155
Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426
|| || ||||| || | | ||| |||||||||||||| || || || || || ||
Sbjct 2849154 AGGCTCGTTAATGATACGGAGAACGTTAAGACCAGCAATGGCACCAGCGTCCTTGGTAGC 2849095
Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG-CATCTGTTACTTCTT 282485
||||||||| || ||||| || || ||||| ||||| | ||||| | ||| |||| |
Sbjct 2849094 TTGTCTTTGAGAGTCGTTGAAGTAGGCAGGGACAGTGACAACGGCCTTCTCGACCTTC-T 2849036
Query 282486 TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545
| ||||| | || || | | ||||| || | | || ||| | || || | ||
Sbjct 2849035 TGCCAATCTTGGCCTCAGCAATCTCCTTCATCTTGGTAAGAACCATGGCGGAGATCTCTT 2848976
Query 282546 CTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 282605
||||| | ||||| || | | ||| || |||| | | || ||| |
Sbjct 2848975 GGGGAGAGAAAGTCTTGGTCTCCTCGAGGTATTGGACCTCAATAAAGGGGTTACCGTTAG 2848916
Query 282606 CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 282665
| ||||| || || |||||| || ||||| ||||||| | |||| ||||
Sbjct 2848915 AGTCGATAACCTTGAAAGGCCAAGTCTTGATATCCTTTTGAACAGAGTCCTCATCAAAAC 2848856
Query 282666 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGAT 282725
||||||||| || || || ||||| || | ||| || | || |||| |||||||| |
Sbjct 2848855 GTCTACCAATCAAACGCTTGGCATCGAAGACAGTGTTCTTGGGGTTAAGAGCAGCTTGGT 2848796
Query 282726 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 282785
|| || ||||| ||||| || || | || | || | ||| | || |||||
Sbjct 2848795 TCTTAGCGGCATCACCAATAAGTCTCTCCTTGTCAGAGAAAGCAACGAACGAAGGAGTAA 2848736
Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAAC 282819
|| |||||||| || || ||||| || || ||
Sbjct 2848735 CACGGTTACCTTGCTCGTTGGCAATGATCTCGAC 2848702
>seq4
Length=2277569
Score = 105 bits (116), Expect = 5e-17
Identities = 114/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382
||||| | | | || || | |||||| || |||||||| ||||| || || || | ||
Sbjct 1737081 TTGTCCTCGGTCTTGTCCAAACCATAAGCCAAAGCAGCGGCAGTAGGCTCGTTGACAACA 1737140
Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442
| |||||| || | |||| ||||| || ||||| ||||| ||||| | ||| || |||
Sbjct 1737141 CGCAAAACGTTCAAACCAACAATTTGACCAGCATCCTTAGTAGCTTGACGTTGAGAGTCG 1737200
Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCAT 282473
|| || || ||||||||||| | ||||||||
Sbjct 1737201 TTGAAGTAAGCAGGAACAGTGACAACGGCAT 1737231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740630203616904
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