Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 336 2e-86 seq1 199 3e-45 seq4 105 5e-17 >seq3 Length=2773601 Score = 336 bits (372), Expect = 2e-86 Identities = 974/1476 (66%), Gaps = 26/1476 (2%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| || || | ||||||||||| || | || || ||||| || ||| Sbjct 1435738 TTCTCAACAGCAGAGACGTTCAAGATACCATTGGCGTCAATGTCGAAAGTGACCTCGATT 1435679 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | |||| || || || || | | || | || || || Sbjct 1435678 TGAGGAACACCACGAGGAGCGGGAGGAATACCAGTGAGCTCGAACTTACCAAGCAAGTTG 1435619 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || || | || ||||||||||||| ||| || || | | ||| || Sbjct 1435618 TTGTCCTTGGTCTTGGTACGCTCACCCTCGAAAACTTGAATGAGGACACCGGGTTGGTTG 1435559 Query 281597 TCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 281655 || | ||| || | || | ||| || || || |||||| || | |||||| || Sbjct 1435558 TCAGCATAGGTGGAGAAGA-TCTCAGACTTCTTGGTAGGAATGGTAGAGTTTCTGGGGAT 1435500 Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC-AA 281714 | |||||||| | ||||||||| || || | ||||||||||||||||| |||||| || Sbjct 1435499 GAGCTTGGTCATGACACCACCAGCAGTCTCGATACCAAGAGAAAGAGGAGCGACATCCAA 1435440 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 | | |||| | |||| || | ||| | |||| ||||||||| ||||||| || Sbjct 1435439 CAACAACAAG-TCTTGAGTCTTGGAAGAAGTGTCACCAGAAAGAATAGCGGCTTGAACAG 1435381 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| ||||| || ||||| || || | | | || | | ||||| |||| Sbjct 1435380 CGGCACCATAGGCAACGGCCTCATCGGGGTTGATGGATCTGTTGGGCTCCTTACCGTTGA 1435321 Query 281835 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | || | |||| ||| | | ||||| || ||||| | || || ||||| | |||| Sbjct 1435320 AGAAGTCGGAAACAAGCTTTTGAACCTTGGGGATACGGGTAGAACCACCAACAAGGACAA 1435261 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 | || | || || || || | || || || | ||| || ||||| || || | Sbjct 1435260 TCTCGTTAACAGAAGACTTGTCAATCTTGGAGTCACGGAGAACCTTCTCAACAGGCTCGA 1435201 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 || ||| ||||| ||| ||| | || |||||| |||| | || | || | Sbjct 1435200 TGGTAGATCTGAACAAATCTTGACACAACTCCTCGAATCTAGCACGGGTGATAGAAGTGT 1435141 Query 282015 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 282074 ||||||| || ||| ||||||| || | ||| || | |||||||| |||||||| | Sbjct 1435140 AGAAATCAATACCCTCGTACAAAGAGTCGATTTCGATAGAAGTTTGAGCAGAAGAAGACA 1435081 Query 282075 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGA 282133 | | || ||||| ||||| || || || | | || |||| ||| || || ||| Sbjct 1435080 AAGTTCTCTTGGCACGCTCACAGGCGGTTCTCAAACGTC-TAAGAGCTCTT--TGGTTGG 1435024 Query 282134 TTCAAA--TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191 | ||| || | || | ||||||||||| || | || | | |||||||| | Sbjct 1435023 TAGAAAGATCCTTCTTGTTCTTTCTCTTGAACTCGGCGACGAAGTGGTTGACAAGACGGT 1434964 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||| ||||| ||||| ||||| | |||| || | || || | || | ||||| | Sbjct 1434963 GATCGAAATCCTCACCACCCAAGTGGGTATCACCAGCAGTGGCCTTGACCTCGAAAATAC 1434904 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 | || |||| | ||| |||| |||||| || |||||||||| |||||| ||||| | Sbjct 1434903 CGTCCTCAATGGTCAAGAGAGAAACATCGAAAGTACCACCACCCAAATCAAAGATAAGGA 1434844 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | ||| | || || || || || | ||| || |||| |||||| ||||| || | Sbjct 1434843 CGTTCTTCTCGGCATCAGACTTCTTGTCCAAACCGTAGGCAATAGCAGCGGCAGTAGGCT 1434784 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | || || || | | ||| |||||||||||||| || ||||| || |||||||| | Sbjct 1434783 CGTTGATGATACGGAGAACGTTAAGACCAGCAATAAGACCAGCATCCTTGGTGGCTTGAC 1434724 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA- 282490 ||| |||||||| || || ||||| |||||||| || || | || || | | ||| Sbjct 1434723 GTTGAGAATCGTTGAAGTAGGCAGGGACAGTAATGACAGCGT-TGCTA--ACAGTACCAC 1434667 Query 282491 -ATATAAGCGCT-TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | || | || || || | ||||| || | | | ||| || || |||| ||| | Sbjct 1434666 CCAAGAAACCCTCAGCAGTCTCCTTCATCTTGGTGAGGACCATAGAAGAGATTTCTTCGG 1434607 Query 282549 GAGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607 ||| | ||| ||| |||| | |||| || ||| || ||| | Sbjct 1434606 GAGTGAAGACCTTCTCCTCACCCTTGA-ACTCGACTT--GGATTTGG-GGCTTGCCAGCC 1434551 Query 282608 TT---AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAAA 282663 || || || || || || | | || ||||| ||| || || || ||| | | Sbjct 1434550 TTGTCAACGACCTTGAAGGGGAAGTGCTTAATATCACTTTGGAC-CTCAGGATCAGTGTA 1434492 Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTG 282723 | ||||||||| || || || ||||| |||| ||| |||| || || | |||||||| Sbjct 1434491 CTTTCTACCAATCAAACGCTTAGCATCGAAAACAGTGTTGGCAGGGTTCATGGCAGCTTG 1434432 Query 282724 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 282783 || || || ||||| ||||| | | | || | || || || | || | || ||||| Sbjct 1434431 ATTCTTAGCAGCATCACCAATTAAACGCTCGGAATCGGTGAAAGCGACGAAAGAAGGAGT 1434372 Query 282784 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTAC 282843 || | |||||||| ||||| ||||| || |||||| || |||| | |||| Sbjct 1434371 AGTTCTGTTACCTTGGTCATTGGCAATGATCTCAACTCTATCATTGGAAAAGTGGGCTAC 1434312 Query 282844 ACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||| | || || || ||||||||||||| ||| Sbjct 1434311 ACAGGAGTAGGTAGTACCCAAATCAATACCAACAGC 1434276 >seq1 Length=5930846 Score = 199 bits (220), Expect = 3e-45 Identities = 458/687 (67%), Gaps = 11/687 (2%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 || ||||| ||||| ||||| | |||| || | || || || | ||||| ||| Sbjct 2278655 TCGAAATCCTCACCACCCAAGTGGGTATCACCAGCAGTGGCCAAGACCTCGAAAACACCA 2278596 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 |||| ||||| | || ||||||| || |||||||||| ||| ||| || Sbjct 2278595 GACTCAATCGACAACAAAGAAACATCAAAAGTACCACCACCCAAATCGTAAACAA----- 2278541 Query 282314 TTCATTTCTTTGTCTTGGTTTTTA---TCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 | |||| || | || || | ||| || |||| ||||||||||| || Sbjct 2278540 -TGATTTGACGCTCGCCATCAGTACGGTCCAAACCGTAGGCAATGGCAGCAGCAGTGGGC 2278482 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 || |||| ||| | ||||| | | | ||||||||| | || ||||| || || ||||| Sbjct 2278481 TCGTTAACAATACGCAAAATAGTCAAACCAGCAATAGTACCGGCATCCTTGGTAGCTTGA 2278422 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC-TTCTTTTCC 282489 | ||| | ||| || ||||| ||||| ||||||| ||| |||| || || ||||| || Sbjct 2278421 CGTTGAGCATCATTGAAATAAGCAGGCACAGTAACAACAGCATGAGTAACCTTCTTACCC 2278362 Query 282490 AATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549 || |||| | || | | ||||| || | |||| ||| | |||| || ||| || Sbjct 2278361 AA-ATAATCCTCGGCAATCTCCTTCATCTTGCCCAAAACCATGGCGGAAACTTCTTCGGG 2278303 Query 282550 AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609 |||| | ||| ||| ||| | |||| || | || ||| | | || Sbjct 2278302 AGAAAAGGTCTTCTCCTCACCACCATAAGTGACTTTAACAGCAGGCTTACCATCCTTGTT 2278243 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 ||||| ||| | || ||| || |||||| ||||||| |||| || | | Sbjct 2278242 GATAACCTTATAAGGGAAATGCTTAATATCTCTTTGAACAGTTTGATCTGAGTACTTAAG 2278183 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 |||||| || || || ||| ||||||||||| | | ||| | | ||| || | || Sbjct 2278182 ACCAATCAAACGCTTGATATCGAAAATAGTATTAGCAGTGTTAGCAGAAGCCTGGTTCTT 2278123 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 || |||||||| | || | | ||| || ||||||| ||||||||| || || | || Sbjct 2278122 AGCAGCATCTCCTACCAAACGCTCTTCATCAGTAAATGCAACATATGAGGGGGTGATACG 2278063 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 | |||||||||||| || | ||| ||||| || ||||||| | ||||| ||||| Sbjct 2278062 AAGACCTTGATCATTGGCCAAAATCTCAACCTTTCCATTTTTCATAACACCAACACATGA 2278003 Query 282850 AAAAGTTGTTCCTAAATCAATACCAAT 282876 | |||| || || | ||||||||| || Sbjct 2278002 ATAAGTAGTACCAAGATCAATACCGAT 2277976 Score = 147 bits (162), Expect = 2e-29 Identities = 415/634 (65%), Gaps = 9/634 (1%) Strand=Plus/Minus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||| ||||||| ||| ||||| | |||| || | ||||| | || ||| | | Sbjct 2849332 TATCGAAATCTTGACCACCCAAGTGGGTATCACCGGCAGTAGCCTTGACAGTGAAGACAC 2849273 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 || ||| | | ||| | ||||| || |||||||| | ||| ||||| || | Sbjct 2849272 CACCTTGGATTTGAAGAAGGGAGACATCGAAAGTACCACCACCAAGATCGAAAATGAGAA 2849213 Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | | | | || | || ||| || | ||||||| || |||| ||||||||||| Sbjct 2849212 CGTGCTTCTCCTCCTC--GGTCTTACCAGCACCAAGACCGTAGGCAATGGCAGCAGCAGT 2849155 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || ||||| || | | ||| |||||||||||||| || || || || || || Sbjct 2849154 AGGCTCGTTAATGATACGGAGAACGTTAAGACCAGCAATGGCACCAGCGTCCTTGGTAGC 2849095 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG-CATCTGTTACTTCTT 282485 ||||||||| || ||||| || || ||||| ||||| | ||||| | ||| |||| | Sbjct 2849094 TTGTCTTTGAGAGTCGTTGAAGTAGGCAGGGACAGTGACAACGGCCTTCTCGACCTTC-T 2849036 Query 282486 TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545 | ||||| | || || | | ||||| || | | || ||| | || || | || Sbjct 2849035 TGCCAATCTTGGCCTCAGCAATCTCCTTCATCTTGGTAAGAACCATGGCGGAGATCTCTT 2848976 Query 282546 CTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 282605 ||||| | ||||| || | | ||| || |||| | | || ||| | Sbjct 2848975 GGGGAGAGAAAGTCTTGGTCTCCTCGAGGTATTGGACCTCAATAAAGGGGTTACCGTTAG 2848916 Query 282606 CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 282665 | ||||| || || |||||| || ||||| ||||||| | |||| |||| Sbjct 2848915 AGTCGATAACCTTGAAAGGCCAAGTCTTGATATCCTTTTGAACAGAGTCCTCATCAAAAC 2848856 Query 282666 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGAT 282725 ||||||||| || || || ||||| || | ||| || | || |||| |||||||| | Sbjct 2848855 GTCTACCAATCAAACGCTTGGCATCGAAGACAGTGTTCTTGGGGTTAAGAGCAGCTTGGT 2848796 Query 282726 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 282785 || || ||||| ||||| || || | || | || | ||| | || ||||| Sbjct 2848795 TCTTAGCGGCATCACCAATAAGTCTCTCCTTGTCAGAGAAAGCAACGAACGAAGGAGTAA 2848736 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAAC 282819 || |||||||| || || ||||| || || || Sbjct 2848735 CACGGTTACCTTGCTCGTTGGCAATGATCTCGAC 2848702 >seq4 Length=2277569 Score = 105 bits (116), Expect = 5e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||||| | | | || || | |||||| || |||||||| ||||| || || || | || Sbjct 1737081 TTGTCCTCGGTCTTGTCCAAACCATAAGCCAAAGCAGCGGCAGTAGGCTCGTTGACAACA 1737140 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | |||||| || | |||| ||||| || ||||| ||||| ||||| | ||| || ||| Sbjct 1737141 CGCAAAACGTTCAAACCAACAATTTGACCAGCATCCTTAGTAGCTTGACGTTGAGAGTCG 1737200 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || ||||||||||| | |||||||| Sbjct 1737201 TTGAAGTAAGCAGGAACAGTGACAACGGCAT 1737231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740630203616904