Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 176 9e-39 seq2 120 6e-22 >seq3 Length=2773601 Score = 176 bits (194), Expect = 9e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||||||||| || || ||||| ||||||| Sbjct 154121 TACCACCACGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAG 154062 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||| || ||||||| ||| || |||||||| || ||||||||||| ||||||| Sbjct 154061 ACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAG 154002 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| | || ||||| || || |||||| | || | Sbjct 154001 GAATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAA 153942 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | ||| || ||||| || || | |||||||| || || |||||| Sbjct 153941 CCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATT 153892 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||||||| ||||||||||| || || || || || || | Sbjct 154577 TACCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGG 154518 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| || || ||||| || ||||||||||| ||||||||||| ||||||| Sbjct 154517 AAAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAG 154458 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| | || ||||| ||||| |||||| | || | Sbjct 154457 GAATACCCTCCTTGTCTTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGA 154398 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 154397 CTTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||| ||||| || || || || ||||||| Sbjct 154349 TACCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAG 154290 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||| || ||||||| ||| || |||||||| || ||||||||||| ||||||| Sbjct 154289 ACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAG 154230 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || | || ||||| ||||| |||||| | || | Sbjct 154229 GAATACCTTCCTTGTCTTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAA 154170 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| || || | |||||||| || || ||||| Sbjct 154169 CTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||||||||| || || || ||||| || | Sbjct 155033 TACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGG 154974 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||||| | ||| || ||||| || || | | ||||| ||||||| Sbjct 154973 AGAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAG 154914 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| | || || || || || |||||| | || | Sbjct 154913 GAATACCTTCCTTGTCTTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGA 154854 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 154853 CTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || |||||||| ||||| ||||| || || || || || || | Sbjct 154805 TACCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGG 154746 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || ||||| || ||||| || || | | ||||| ||||||| Sbjct 154745 AGAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAG 154686 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| | || || || ||||| |||||| | ||| | Sbjct 154685 GAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAA 154626 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 154625 CTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || || || ||||| || || || || | Sbjct 155261 TACCGCCACGAAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 155202 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||||||| || || || || |||||||| ||||||||||| ||||| | Sbjct 155201 AGAGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGG 155142 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| | || ||||| ||||| || || || || | Sbjct 155141 GAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATGGTGTCCGAAGACTCGA 155082 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || || | ||||| || || || ||||| Sbjct 155081 CCTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 155033 Score = 127 bits (140), Expect = 4e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||||||| || || | ||| ||||| || || || || || || || |||| Sbjct 1977700 TACCACCTCTCAAACGGAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAG 1977641 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| || || || ||||| || || || ||||| || | |||||||||||| | Sbjct 1977640 AAAGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGG 1977581 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||| ||||| | || || || ||||| || || || || | Sbjct 1977580 GAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGA 1977521 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 | || | || || ||||| || || | ||||| || || Sbjct 1977520 CCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 1977481 >seq2 Length=4956242 Score = 120 bits (132), Expect = 6e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| |||||||| || || || || || || ||||| || | | ||| Sbjct 2345911 ACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACC 2345970 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || ||||||||||| | | |||||||||||| || ||||| ||||| Sbjct 2345971 ATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTT 2346030 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| | || ||||| || || || || || || || || | || || Sbjct 2346031 GTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGAT 2346090 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 ||||| || || | ||||| || || || ||||| ||| || Sbjct 2346091 AGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCATCGTTAAAT 2346134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827149681356