Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 194 4e-44 seq2 120 7e-22 seq3 104 6e-17 >seq1 Length=5930846 Score = 194 bits (214), Expect = 4e-44 Identities = 441/647 (68%), Gaps = 25/647 (4%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||||| | || ||||| | ||| || || || ||||| || ||||| ||||| ||| Sbjct 4967427 CAATTATCGTCCTGCTTCTTGGTAGCTATGAAAGAGGATTCCATAGAAGGCATTTACGAT 4967368 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTCA 110629 | || ||||| ||| | || || ||||||| | || || |||||| | ||| |||| Sbjct 4967367 ACCCTAAAAGACTGCGCTATGATCTC-AAAAACTGCAGGTGGGATTGGTCTCCACATTCA 4967309 Query 110630 TGATATTCGCTCAAAAGGAGCAAATATCGCAAC-AGCGAAGGGTGCTTCAACTGGACTTG 110688 | |||| || || | || || | || || || | || ||| ||| |||| ||| Sbjct 4967308 TAATATCCGGTCGACGGGTGCTTACATTGCTGGGAGTAATGGCAGCTCCAA-TGGAATTG 4967250 Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAA 110748 | || ||| ||||||| || ||| | ||||| | ||||| |||| |||||||| | || Sbjct 4967249 TGCCGATGCTAAGAGTTTTTAACAATACTGCCAGGTATGTAGATCAGGGTGGTAACAAAA 4967190 Query 110749 AT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 || | |||||||| || | ||||||||||| |||||||| || || |||| Sbjct 4967189 GACCAGGTGCTTTTGCTATTTACTTGGAACCTTGGCACAGTGATATATTAGAGTTTTTAG 4967130 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | || |||||||| || |||||| |||||| || || || |||||||| | | Sbjct 4967129 AGTTACGAAAAAATCACGGCAAAGAAGAATTAAGAGCTCGAGACTTGTTTTATGCTCTTT 4967070 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATG--TGGTCTCTTA-TGT 110922 |||| | ||||| ||||||||| || ||| || || | |||| |||| | | Sbjct 4967069 GGATCCCTGATTTGTTCATGAAAAAGGT--AAGCAACAACCAAGAATGGT-GCTTATTTT 4967013 Query 110923 GTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTT-TAC 110981 ||| || |||||||| ||||||| || || || | || || ||| || || ||| Sbjct 4967012 CACCTGATGAAGCTCCTGGTTTATCTGACGTCTACGGTGATGAATTCGAA-ACTTTGTAC 4966954 Query 110982 GAAAAATATGAAAAAGAAGGCA---AGTTTCGCAA--ACAAATTCCAGCTCAAGAACTTT 111036 ||| ||||||||||||| || | ||||||| || | |||| ||| || | Sbjct 4966953 AAAAGATATGAAAAAGAAAACAGACATGTTCGCAAGGTCAGAGCCCAG---AAG--CTCT 4966899 Query 111037 GGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATC 111096 |||| || | || | ||||| || ||||||||||| | || | || |||||| Sbjct 4966898 GGTTTGCCATTTTAGAGACTCAAGTCGAGACTGGAACTCCATTCATGCTTTACAAAGATT 4966839 Query 111097 ATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCT 111143 ||| | ||||| ||||||| ||| | || || ||||| ||| Sbjct 4966838 CCTGTAACAGAAAATCAAATCAAAATAATCTTGGTACGATTAAATCT 4966792 >seq2 Length=4956242 Score = 120 bits (132), Expect = 7e-22 Identities = 163/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||| | | ||| ||||| || ||||| ||| | |||||||| |||||||||||| Sbjct 3754614 GACATATCATTGATGATGATCCTGTGCTGTTTAATCGTCAACCATCGTTGCATAAAATGT 3754555 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAATGTAAG 305424 | |||||||| |||| ||| |||| |||| | | ||| ||||| || ||||| || Sbjct 3754554 CCATGATGGCCCATAGAGT-AAAG-GTTATGCCGTATTCCACATTCCGTCTAAATCTATC 3754497 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | |||| |||||||| ||||| ||||| || ||||||||| ||||||| ||||| Sbjct 3754496 TGTGACTTCGCCATATAATGCTGATTTCGATGGTGACGAAATGAATTTGCATGTTCCTCA 3754437 Query 305485 ATCAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGT 305526 || ||| || | |||| || || || | ||| |||| Sbjct 3754436 GTCGGAGGAGACCAGAGCTGAGTTGTCCCAATTGTGTGCTGT 3754395 Score = 111 bits (122), Expect = 4e-19 Identities = 255/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854 ||||| ||||| || || |||||| | ||||||| |||||| | | |||| || Sbjct 3219805 ATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCTGATGATCAGTCCACTTTTGCT 3219864 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGC- 131913 | || || || |||||| ||||| ||||| ||||| || || | || ||| Sbjct 3219865 GAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATT---TGCC 3219921 Query 131914 --TATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTC 131971 |||||| ||| | |||||||||||| | |||||||| || | || || || |||| Sbjct 3219922 AGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAACGAATTG 3219981 Query 131972 ATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCT 132031 |||||| | ||||||| |||| || || |||||| || | | | | ||| Sbjct 3219982 ATCTCGCGTGATGAAGGCATGCACACCGATTTTGCTTGTTTGCTTTTCGGCCACCTTGTC 3220041 Query 132032 GATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAG 132091 | | || | | | | |||| || | |||| | ||||| ||| ||| || ||| Sbjct 3220042 AACAGACCTAAGAAGTCTGTTATTGAAAAGATTATCACTGAAGCCGTTATTATTGAAAAG 3220101 Query 132092 GAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAG 132151 ||||| | || || |||||||| || | | | | || |||||||| | |||| Sbjct 3220102 GAGTTCTTGACTGATGCTTTGCCATGTAGTCTTTTGGGAATGAATGCCAAGCTTATGTGC 3220161 Query 132152 GAGTACATTGAATTCGTTGCTGA 132174 | |||||||| || |||||||| Sbjct 3220162 CAATACATTGAGTTTGTTGCTGA 3220184 Score = 91.5 bits (100), Expect = 3e-13 Identities = 84/104 (81%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 167248 CACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTA 167306 |||| || ||||| || ||| |||| |||||||| || ||||||| || ||||||| | Sbjct 42084 CACCCGCGTTATCAAACTCAC-CGCAGTAATTTGGAGCCGAAAATAATGTCACTAATTGA 42142 Query 167307 CGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGC 167350 || || |||| |||||||| ||||||||||| |||| |||||| Sbjct 42143 CGCTTAGAAAAGAATTCATAGCCATCTTCAACTACTTGATGGGC 42186 >seq3 Length=2773601 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 279853 TCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAG 279912 ||| ||||| || | | |||||||| || || || |||||||||||| | | | | Sbjct 2461626 TCGATCTATCCCGTCTCTCATGGATGGATTCAAGCCCGGTCAGCGTAAGATTCTGTACGG 2461685 Query 279913 TTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTC 279972 ||||||||| | || ||||| || ||||| || ||||| || | |||||||| || Sbjct 2461686 TTGTTTCAAGCGTAACTTGGTCAACGAAATCAAAGTAGCTCAATTGGGTGGTTATGTATC 2461745 Query 279973 AGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGC 280032 |||| | | ||||| || ||||| ||| ||| || | | ||||| |||||||| Sbjct 2461746 AGAAAACACTGGTTACCACCACGGAGAACAGTCGCTGTACCAAACCATTGTTGGTCTTGC 2461805 Query 280033 CCAAGATTTTATGGCTTCAAACAAC 280057 ||||||||| | | ||| || ||| Sbjct 2461806 GCAAGATTTTGTTGGTTCCAATAAC 2461830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812739175844