Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1 194 4e-44
seq2 120 7e-22
seq3 104 6e-17
>seq1
Length=5930846
Score = 194 bits (214), Expect = 4e-44
Identities = 441/647 (68%), Gaps = 25/647 (4%)
Strand=Plus/Minus
Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570
||||| | || ||||| | ||| || || || ||||| || ||||| ||||| |||
Sbjct 4967427 CAATTATCGTCCTGCTTCTTGGTAGCTATGAAAGAGGATTCCATAGAAGGCATTTACGAT 4967368
Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTCA 110629
| || ||||| ||| | || || ||||||| | || || |||||| | ||| ||||
Sbjct 4967367 ACCCTAAAAGACTGCGCTATGATCTC-AAAAACTGCAGGTGGGATTGGTCTCCACATTCA 4967309
Query 110630 TGATATTCGCTCAAAAGGAGCAAATATCGCAAC-AGCGAAGGGTGCTTCAACTGGACTTG 110688
| |||| || || | || || | || || || | || ||| ||| |||| |||
Sbjct 4967308 TAATATCCGGTCGACGGGTGCTTACATTGCTGGGAGTAATGGCAGCTCCAA-TGGAATTG 4967250
Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAA 110748
| || ||| ||||||| || ||| | ||||| | ||||| |||| |||||||| | ||
Sbjct 4967249 TGCCGATGCTAAGAGTTTTTAACAATACTGCCAGGTATGTAGATCAGGGTGGTAACAAAA 4967190
Query 110749 AT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805
|| | |||||||| || | ||||||||||| |||||||| || || ||||
Sbjct 4967189 GACCAGGTGCTTTTGCTATTTACTTGGAACCTTGGCACAGTGATATATTAGAGTTTTTAG 4967130
Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865
| | || |||||||| || |||||| |||||| || || || |||||||| | |
Sbjct 4967129 AGTTACGAAAAAATCACGGCAAAGAAGAATTAAGAGCTCGAGACTTGTTTTATGCTCTTT 4967070
Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATG--TGGTCTCTTA-TGT 110922
|||| | ||||| ||||||||| || ||| || || | |||| |||| | |
Sbjct 4967069 GGATCCCTGATTTGTTCATGAAAAAGGT--AAGCAACAACCAAGAATGGT-GCTTATTTT 4967013
Query 110923 GTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTT-TAC 110981
||| || |||||||| ||||||| || || || | || || ||| || || |||
Sbjct 4967012 CACCTGATGAAGCTCCTGGTTTATCTGACGTCTACGGTGATGAATTCGAA-ACTTTGTAC 4966954
Query 110982 GAAAAATATGAAAAAGAAGGCA---AGTTTCGCAA--ACAAATTCCAGCTCAAGAACTTT 111036
||| ||||||||||||| || | ||||||| || | |||| ||| || |
Sbjct 4966953 AAAAGATATGAAAAAGAAAACAGACATGTTCGCAAGGTCAGAGCCCAG---AAG--CTCT 4966899
Query 111037 GGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATC 111096
|||| || | || | ||||| || ||||||||||| | || | || ||||||
Sbjct 4966898 GGTTTGCCATTTTAGAGACTCAAGTCGAGACTGGAACTCCATTCATGCTTTACAAAGATT 4966839
Query 111097 ATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCT 111143
||| | ||||| ||||||| ||| | || || ||||| |||
Sbjct 4966838 CCTGTAACAGAAAATCAAATCAAAATAATCTTGGTACGATTAAATCT 4966792
>seq2
Length=4956242
Score = 120 bits (132), Expect = 7e-22
Identities = 163/222 (73%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366
||||| | | ||| ||||| || ||||| ||| | |||||||| ||||||||||||
Sbjct 3754614 GACATATCATTGATGATGATCCTGTGCTGTTTAATCGTCAACCATCGTTGCATAAAATGT 3754555
Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAATGTAAG 305424
| |||||||| |||| ||| |||| |||| | | ||| ||||| || ||||| ||
Sbjct 3754554 CCATGATGGCCCATAGAGT-AAAG-GTTATGCCGTATTCCACATTCCGTCTAAATCTATC 3754497
Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484
|| | |||| |||||||| ||||| ||||| || ||||||||| ||||||| |||||
Sbjct 3754496 TGTGACTTCGCCATATAATGCTGATTTCGATGGTGACGAAATGAATTTGCATGTTCCTCA 3754437
Query 305485 ATCAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGT 305526
|| ||| || | |||| || || || | ||| ||||
Sbjct 3754436 GTCGGAGGAGACCAGAGCTGAGTTGTCCCAATTGTGTGCTGT 3754395
Score = 111 bits (122), Expect = 4e-19
Identities = 255/383 (67%), Gaps = 6/383 (2%)
Strand=Plus/Plus
Query 131795 ATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT 131854
||||| ||||| || || |||||| | ||||||| |||||| | | |||| ||
Sbjct 3219805 ATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCTGATGATCAGTCCACTTTTGCT 3219864
Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGC- 131913
| || || || |||||| ||||| ||||| ||||| || || | || |||
Sbjct 3219865 GAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATT---TGCC 3219921
Query 131914 --TATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTC 131971
|||||| ||| | |||||||||||| | |||||||| || | || || || ||||
Sbjct 3219922 AGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAACGAATTG 3219981
Query 131972 ATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCT 132031
|||||| | ||||||| |||| || || |||||| || | | | | |||
Sbjct 3219982 ATCTCGCGTGATGAAGGCATGCACACCGATTTTGCTTGTTTGCTTTTCGGCCACCTTGTC 3220041
Query 132032 GATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAG 132091
| | || | | | | |||| || | |||| | ||||| ||| ||| || |||
Sbjct 3220042 AACAGACCTAAGAAGTCTGTTATTGAAAAGATTATCACTGAAGCCGTTATTATTGAAAAG 3220101
Query 132092 GAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAG 132151
||||| | || || |||||||| || | | | | || |||||||| | ||||
Sbjct 3220102 GAGTTCTTGACTGATGCTTTGCCATGTAGTCTTTTGGGAATGAATGCCAAGCTTATGTGC 3220161
Query 132152 GAGTACATTGAATTCGTTGCTGA 132174
| |||||||| || ||||||||
Sbjct 3220162 CAATACATTGAGTTTGTTGCTGA 3220184
Score = 91.5 bits (100), Expect = 3e-13
Identities = 84/104 (81%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 167248 CACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTA 167306
|||| || ||||| || ||| |||| |||||||| || ||||||| || ||||||| |
Sbjct 42084 CACCCGCGTTATCAAACTCAC-CGCAGTAATTTGGAGCCGAAAATAATGTCACTAATTGA 42142
Query 167307 CGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGC 167350
|| || |||| |||||||| ||||||||||| |||| ||||||
Sbjct 42143 CGCTTAGAAAAGAATTCATAGCCATCTTCAACTACTTGATGGGC 42186
>seq3
Length=2773601
Score = 104 bits (114), Expect = 6e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 279853 TCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAG 279912
||| ||||| || | | |||||||| || || || |||||||||||| | | | |
Sbjct 2461626 TCGATCTATCCCGTCTCTCATGGATGGATTCAAGCCCGGTCAGCGTAAGATTCTGTACGG 2461685
Query 279913 TTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTC 279972
||||||||| | || ||||| || ||||| || ||||| || | |||||||| ||
Sbjct 2461686 TTGTTTCAAGCGTAACTTGGTCAACGAAATCAAAGTAGCTCAATTGGGTGGTTATGTATC 2461745
Query 279973 AGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGC 280032
|||| | | ||||| || ||||| ||| ||| || | | ||||| ||||||||
Sbjct 2461746 AGAAAACACTGGTTACCACCACGGAGAACAGTCGCTGTACCAAACCATTGTTGGTCTTGC 2461805
Query 280033 CCAAGATTTTATGGCTTCAAACAAC 280057
||||||||| | | ||| || |||
Sbjct 2461806 GCAAGATTTTGTTGGTTCCAATAAC 2461830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186812739175844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |