Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3 102 5e-17 >seq3 Length=2773601 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||| || ||||| ||||| || ||||| Sbjct 155032 ACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGA 154973 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||||||| || || || |||||||||||||| || ||| | || Sbjct 154972 GAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGG 154913 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||| || || | || | ||| | || || || || | Sbjct 154912 AATACCTTCCTTGTCTTGAATCTT-AGTCTTGACGTTGTCGATAGTATCAGAGGACTCGA 154854 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || ||||| || || || || || ||||| |||||| Sbjct 154853 CTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCATA 154804 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 154804 ACCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGA 154745 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || | ||| || || || |||||||||||||| || ||| | || Sbjct 154744 GAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGG 154685 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || || | || | || | || || ||||| | Sbjct 154684 AATACCCTCCTTGTCTTGAATCTT-GGTCTTGACGTTATCAATAGTATCAGAGGATTCAA 154626 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || ||||| || || || || || ||||| |||||| Sbjct 154625 CTTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCATA 154576 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| || ||||| ||||||||||| || Sbjct 154348 ACCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 154289 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || ||||| || || |||||||| | | || || ||| | || Sbjct 154288 CAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGG 154229 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| || | ||||| || | || || || || | Sbjct 154228 AATACCTTCCTTGTCTTGAATTTT-GGTCTTAACATTATCAATAGTATCAGAGGACTCAA 154170 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || ||||| || | || ||||| ||||| |||||| Sbjct 154169 CTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATA 154120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703983975680