Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 149 5e-31 >seq2 Length=4956242 Score = 149 bits (164), Expect = 5e-31 Identities = 408/617 (66%), Gaps = 26/617 (4%) Strand=Plus/Plus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 |||||| || || ||||| |||| || ||| | || ||||| || ||||||||||| Sbjct 3219417 AGAAAACCCTAACAGATTTGTTCTGTTCCCTATTAAGTACCATGAGATTTGGCAAATGTA 3219476 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT-AG 43802 ||| | || |||| || || ||||| || |||||| ||||||| || ||| | || Sbjct 3219477 CAAGCAGGCTGAGGCTTCTTTCTGGACTGCTGAAGAAATTGATTTAGGAAAGGACATCAG 3219536 Query 43803 CACATTGGATTGCA-----TTAAAACCACAAGAAAA-ACATTTTATATCTTTGGTTT--T 43854 | ||| ||| |||| | || | | ||||| ||||| | || | | Sbjct 3219537 TGACTGGGA--GCACCGTCTTAATG----ATGATGAGAGATTTTTTATCTCTCGTGTCCT 3219590 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || |||||||| || || || ||||| || || |||||| | || | Sbjct 3219591 TGCATTCTTTGCTGCTTCAGATGGTATCGTCAACGAGAACTTGGTTGAAAGATTCTCTGG 3219650 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||||||| | || || ||| |||||||| || || |||||| || || || || Sbjct 3219651 TGAAGTTCAAATTCCCGAGGCAAAGTGTTTTTACGGTTTCCAAATTATGATGGAGAACAT 3219710 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||| | || | ||| | || || || || || ||||| |||| | ||| | Sbjct 3219711 CCATGCAGAGACCTACTCATTACTTATTGACACTTATATCAAGGATGCTAAGGAGGCTAA 3219770 Query 44035 TCGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 ||||| |||| || || || | | | || ||||| | || || |||||||| | Sbjct 3219771 CTTTTTGTTCCATGCTATTGACAATATTCCATGT-ATTAAGAAGAAGGCTGACTGGGCTC 3219829 Query 44094 TTAAATGGATAAATTCAAATGATT------CTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | |||||| | | ||||| |||||| || || || || || ||||| | Sbjct 3219830 TCCGATGGAT---TGCTGATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCCTTTGCTG 3219886 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAG 44207 || || || || ||||| || ||||| ||||| || || ||||| ||||| || | Sbjct 3219887 CCGTTGAGGGTATCTTCTTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAGAAGCGTG 3219946 Query 44208 GTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATT 44267 | | |||||||| ||||||| ||||| || || || |||||||||||| | || Sbjct 3219947 GACTCATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCATGCACA 3220006 Query 44268 GCGATTTTGCTTGCTTG 44284 |||||||||||| ||| Sbjct 3220007 CCGATTTTGCTTGTTTG 3220023 Score = 100 bits (110), Expect = 2e-16 Identities = 238/358 (66%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGT--CAATCGGAAGAAA 19486 ||||| |||||||||||||| ||||| | | || || |||||| || | ||||| | Sbjct 2172034 CCCAAGATTGTAAATGGTCCCGAAATGCTCAGCAAGTACGTAGGTAGCAGT--GAAGAGA 2171977 Query 19487 ATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTT 19546 || | || ||||| |||||||| | || | ||| ||| | || Sbjct 2171976 ATATTCGTAACCTGTTTAAGGACGCTGAGGCCGAGTATAAAGAGAAAGGAGACGAATCGC 2171917 Query 19547 CTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG 19606 ||||||||||| || | || || ||||| || | | ||||||||||||||| ||| Sbjct 2171916 AATTGCACATTATTATTTTCGACGAGTTGGATGCTGTGTTCAAGCAAAGAGGTTCTCGTG 2171857 Query 19607 TAAATGGA------GTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTG 19660 |||| || ||||| |||||||||||| | | | ||| | || |||| Sbjct 2171856 GTGATGGTACTGGTGTTGGTGACAATGTTGTCAATCAGTTGTTAGCTAAAATGGATGGTG 2171797 Query 19661 TTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACA 19720 || | || || ||||| ||||| |||||||| ||||| || |||| || | || ||| Sbjct 2171796 TTGAACAGCTTAATAACATTTTGGTTATTGGTATGACCAACAGACGAGATCTTATTGACT 2171737 Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || || | || || ||||| || ||| | | | ||||| ||| || ||||| Sbjct 2171736 CGGCATTGCTTCGTCCTGGTCGTTTCGAAGTTCAATTGGAAATCCCCTTGCCTGATGA 2171679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455980624020