Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2 149 5e-31
>seq2
Length=4956242
Score = 149 bits (164), Expect = 5e-31
Identities = 408/617 (66%), Gaps = 26/617 (4%)
Strand=Plus/Plus
Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743
|||||| || || ||||| |||| || ||| | || ||||| || |||||||||||
Sbjct 3219417 AGAAAACCCTAACAGATTTGTTCTGTTCCCTATTAAGTACCATGAGATTTGGCAAATGTA 3219476
Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT-AG 43802
||| | || |||| || || ||||| || |||||| ||||||| || ||| | ||
Sbjct 3219477 CAAGCAGGCTGAGGCTTCTTTCTGGACTGCTGAAGAAATTGATTTAGGAAAGGACATCAG 3219536
Query 43803 CACATTGGATTGCA-----TTAAAACCACAAGAAAA-ACATTTTATATCTTTGGTTT--T 43854
| ||| ||| |||| | || | | ||||| ||||| | || | |
Sbjct 3219537 TGACTGGGA--GCACCGTCTTAATG----ATGATGAGAGATTTTTTATCTCTCGTGTCCT 3219590
Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914
|| || |||||||| || || || ||||| || || |||||| | || |
Sbjct 3219591 TGCATTCTTTGCTGCTTCAGATGGTATCGTCAACGAGAACTTGGTTGAAAGATTCTCTGG 3219650
Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974
||||||||| | || || ||| |||||||| || || |||||| || || || ||
Sbjct 3219651 TGAAGTTCAAATTCCCGAGGCAAAGTGTTTTTACGGTTTCCAAATTATGATGGAGAACAT 3219710
Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034
||| | || | ||| | || || || || || ||||| |||| | ||| |
Sbjct 3219711 CCATGCAGAGACCTACTCATTACTTATTGACACTTATATCAAGGATGCTAAGGAGGCTAA 3219770
Query 44035 TCGATTGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093
||||| |||| || || || | | | || ||||| | || || |||||||| |
Sbjct 3219771 CTTTTTGTTCCATGCTATTGACAATATTCCATGT-ATTAAGAAGAAGGCTGACTGGGCTC 3219829
Query 44094 TTAAATGGATAAATTCAAATGATT------CTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147
| |||||| | | ||||| |||||| || || || || || ||||| |
Sbjct 3219830 TCCGATGGAT---TGCTGATGATCAGTCCACTTTTGCTGAGCGTCTCGTTGCCTTTGCTG 3219886
Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAG 44207
|| || || || ||||| || ||||| ||||| || || ||||| ||||| || |
Sbjct 3219887 CCGTTGAGGGTATCTTCTTCTCTGGATCATTTGCCAGTATCTTCTGGTTGAAGAAGCGTG 3219946
Query 44208 GTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATT 44267
| | |||||||| ||||||| ||||| || || || |||||||||||| | ||
Sbjct 3219947 GACTCATGCCTGGTCTGACGTTCTCAAACGAATTGATCTCGCGTGATGAAGGCATGCACA 3220006
Query 44268 GCGATTTTGCTTGCTTG 44284
|||||||||||| |||
Sbjct 3220007 CCGATTTTGCTTGTTTG 3220023
Score = 100 bits (110), Expect = 2e-16
Identities = 238/358 (66%), Gaps = 10/358 (3%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGT--CAATCGGAAGAAA 19486
||||| |||||||||||||| ||||| | | || || |||||| || | ||||| |
Sbjct 2172034 CCCAAGATTGTAAATGGTCCCGAAATGCTCAGCAAGTACGTAGGTAGCAGT--GAAGAGA 2171977
Query 19487 ATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTT 19546
|| | || ||||| |||||||| | || | ||| ||| | ||
Sbjct 2171976 ATATTCGTAACCTGTTTAAGGACGCTGAGGCCGAGTATAAAGAGAAAGGAGACGAATCGC 2171917
Query 19547 CTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG 19606
||||||||||| || | || || ||||| || | | ||||||||||||||| |||
Sbjct 2171916 AATTGCACATTATTATTTTCGACGAGTTGGATGCTGTGTTCAAGCAAAGAGGTTCTCGTG 2171857
Query 19607 TAAATGGA------GTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTG 19660
|||| || ||||| |||||||||||| | | | ||| | || ||||
Sbjct 2171856 GTGATGGTACTGGTGTTGGTGACAATGTTGTCAATCAGTTGTTAGCTAAAATGGATGGTG 2171797
Query 19661 TTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACA 19720
|| | || || ||||| ||||| |||||||| ||||| || |||| || | || |||
Sbjct 2171796 TTGAACAGCTTAATAACATTTTGGTTATTGGTATGACCAACAGACGAGATCTTATTGACT 2171737
Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778
|| || | || || ||||| || ||| | | | ||||| ||| || |||||
Sbjct 2171736 CGGCATTGCTTCGTCCTGGTCGTTTCGAAGTTCAATTGGAAATCCCCTTGCCTGATGA 2171679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397455980624020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |