Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 163 4e-35 seq1 95.1 2e-14 >seq2 Length=4956242 Score = 163 bits (180), Expect = 4e-35 Identities = 1063/1686 (63%), Gaps = 59/1686 (3%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || ||||| || || | || ||| |||| | ||||||| || | ||| Sbjct 3634391 TAGTACATTCCTGTCTTAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTTG 3634332 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCC 110488 ||| || ||| || ||| | | ||||| | ||||||||| || || ||| | Sbjct 3634331 CCCATAGTAGGAGCTTGAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCA 3634272 Query 110489 CGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGA 110548 || | || ||||||||||||| |||| || |||||||| || ||| | Sbjct 3634271 CGATCAGCAGCCATATCAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAAT 3634212 Query 110549 TTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATG 110608 ||||||||| || ||||| | | |||||||| || ||||| || | || Sbjct 3634211 GCCTTGATATCCTCAGGGATGTTAGGAATATTCTGAATAGAACCATTG---TTGGCAATA 3634155 Query 110609 AG---ATCCTTCATATCCTTGGACCAGAGACC--AATCTTCTTGAGGTCATTGACGAGGT 110663 | || |||||| | || ||| || || |||| | ||||| || | | Sbjct 3634154 ATTCTATTCTTCATGTTCTCTCCCCACAGTCCCAAATCGACA--AGGTCCTTCAACAACC 3634097 Query 110664 GCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGT 110723 | || ||||| || ||||| || || ||| | ||||||||| | ||||| Sbjct 3634096 ATTGATTAACAATTTGGAATTCACCGGCAAGAACTCTACGAGAGTAGATGTTGGATGTGT 3634037 Query 110724 ATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 110783 | ||||| || ||||| || ||||| | ||||||| || ||||| || ||||| || | Sbjct 3634036 AAGGTTCGAAACATTCGTTGTTACCAAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAG 3633977 Query 110784 CCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGT 110843 | | | ||| ||| | ||||| | || || | ||||||| || |||||| Sbjct 3633976 CAACGAGAAGGGAGTTTCTCAGACCATGCTTAGCCATCTTCTTCTTGAGAGCAGCCCAGT 3633917 Query 110844 CGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTG--AAGCACCCCTTGGGAC 110899 | || || | | || | | | |||||| ||||| || || |||| ||| | Sbjct 3633916 CCCAGA-GATCAGTGGGAGTGATAT-CCCACAAATCAAATTGCAAAAGACCCTTTGAG-- 3633861 Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 110959 || |||||||| | | || ||||||| || | ||| || | |||| | Sbjct 3633860 GCAGGAGAACCTTGGTAAGTCTCATAGGGTCCGTACAATTCGGCGAGTTCAACCGAAGAT 3633801 Query 110960 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 111019 || | | || ||||| ||||| ||| || || | |||| | |||||| ||| Sbjct 3633800 TCAACAGCAGCATGATAGATGGTCTCAGCAATTTGAACGTTCAATTGCTTGGCCTCAGGG 3633741 Query 111020 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 || || |||| | ||| ||||| |||| || | |||||||| ||| | | || Sbjct 3633740 GAGTCGAATGGCAAACGGAGAGCCATAAAGGCATCGGCCAAACCTTGAATACCAAGAGCA 3633681 Query 111080 ATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 || |||||||| || | ||| ||||| || || || || ||||| |||||||| Sbjct 3633680 ATGGGTCTGTGACGGAAATTGCTTCTTTCA-GCTTCCTTGACAGGGTAAAAGTTTCTGTC 3633622 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT- 111197 ||| | || | ||| | || |||| ||| | | || |||||||| | | | | Sbjct 3633621 AATAATAACATTCAAGTTTCTAGTGACAACCTTGGCAACCTCGTGAAGTTTGTTAAAGTT 3633562 Query 111198 ------CAAAAGTGCGAGTCTCTTCATTGACAT---ACTTTGGAAGGGCGATTGATGCCA 111248 |||| | | ||| ||| | || | || || | | ||||||| Sbjct 3633561 ATACCACAAACCTTC----CTCATCACTTTCAACGAAAGCAGGTAGAGACAACGATGCCA 3633506 Query 111249 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGG 111308 |||| || || || || || | | |||||| | |||||| || ||||||| Sbjct 3633505 AATTACAGACGGCAACTTCTTCAGGAGAAGAGTACTCAACAATTTCACAGCACAAGTTGG 3633446 Query 111309 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGA 111368 | ||| || || ||||| || | |||||||||||| | || || |||||||| || | Sbjct 3633445 AGGACTTGATAGTACCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATCCTTATAAA 3633386 Query 111369 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG 111427 ||||| | || | || ||||| || || | || ||||||||| | ||| | | | | | Sbjct 3633385 GCATGAATGGGTTACCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAGCTTTTGGG 3633326 Query 111428 GCTGGTACAATGG--CGT-TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCA 111484 || | |||| | | || | | || ||| ||||||||| || || || | Sbjct 3633325 CCTTG----ATGGTTCTTCTGCCTCTACCTTCCTTCTCGTACTTCTCATAAAGAGCAACG 3633270 Query 111485 AACTCCTCACC---CACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 111541 ||||| ||||| || | || || || || || | ||||| | | || | Sbjct 3633269 AACTCGTCACCATAGACATCATCCAAG---CCAGGACACTCATTGGGACACATCAAAGTC 3633213 Query 111542 CATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 || | || | || ||| || | ||||||||| | ||| |||||||| || | | | Sbjct 3633212 CAAT--CCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAGAGCCAAGA 3633155 Query 111600 AGAGATCTCT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 | | |||||| ||| || | ||||| | ||| || || ||| | ||||| ||| || Sbjct 3633154 ACAAATCTCTGGCACGGA-CTTCTTCCTTACCGTGATTCTTTCGCAGCTCAATGAATTCA 3633096 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCA 111715 | | ||| | ||||| ||||| | || | || | || || ||| | ||| Sbjct 3633095 AAAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAAGCACCTGGTCGCTTATTACCA 3633036 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 | |||| ||||| | || || || || || | | ||| |||| |||||| | | Sbjct 3633035 CCCTGATCAACATATCTAGCAGTATTATTGAAAACTCTCAACATGGGAACAATACCGTTT 3632976 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATC 111835 || ||| || || || ||| || | | || | | || ||| | || Sbjct 3632975 GAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCACGGATATTATGAACACTCAAA 3632916 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 |||||||| ||||| ||||||| || ||||| | | | ||| | || || || Sbjct 3632915 CCAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTCTTCAAAGTATCGTAAATGCCA 3632856 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || || || ||||| || | | ||||||| |||||| || || | || ||| Sbjct 3632855 TCTATAGAATCGTCCTTCATGTTAACCAAGAAGCAAGAGGACATTTGAGGCTTGGGAGTA 3632796 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTA 112014 ||||||||| | || || || | || || | || |||| ||| ||||| | || ||| Sbjct 3632795 CCAGCATTGTACAGAGTGGGGGAGGCATGTGT-AAAATACTTTTGAGACATGTAGTTGTA 3632737 Query 112015 TGTCTC 112020 ||| || Sbjct 3632736 TGTTTC 3632731 Score = 107 bits (118), Expect = 2e-18 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | || ||||| || || || | ||| |||||||| ||||| Sbjct 3220016 GCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCA 3219957 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||||||||| | ||| | ||||| || |||||||||||| Sbjct 3219956 GGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATA 3219897 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCAT---CA 122835 ||||| || ||||| |||| || || || || || | | |||| ||| || Sbjct 3219896 CCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTG---GACTGATCATCAGCA 3219840 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876 | |||| | ||||| | |||||||||| ||||||||| Sbjct 3219839 ATCCATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGG 3219799 >seq1 Length=5930846 Score = 95.1 bits (104), Expect = 2e-14 Identities = 297/457 (65%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 110331 TGAACTGAATTGGT-CGG--GCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGA 110387 |||||||||| ||| | | ||| || || | ||| | ||||||||| || || || | Sbjct 4965777 TGAACTGAATAGGTGCAGAAGCT---GCTTTCGTTCGTAAATAGTACATTCCTGTTTTTA 4965833 Query 110388 GTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCA 110447 || | ||||| | || | ||||||| | ||| || || ||| ||| || Sbjct 4965834 ACCCCTTCTTCCAGCCATAAAAATGCATACTCGTGAGTTTTCCTGCAGTAGGATTTTTCA 4965893 Query 110448 TGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAA 110507 |||| | |||||||| ||| || ||||| | || || || | || ||||| |||| Sbjct 4965894 TGAAAATATTCATACTCTGAGACTGATCAATATAACGGCCACGGTCAGCTGCCATGTCAA 4965953 Query 110508 TGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGA 110567 | | | |||| | | |||||| | || ||| | || || | || | || | Sbjct 4965954 TAATAACCTTTTGGCTCAATTCCCAGGCAGTCTTATATATATCTTTCAGCTCCTTGGGAA 4966013 Query 110568 TATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGG 110627 | || | ||| || || || || || || | | | || | || | | ||||| || Sbjct 4966014 TCTCGGGGATGTTTTGAATAGAGCCATCCTCGCTAATAATCATATTCCTGATATCATTAT 4966073 Query 110628 ACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCAC 110687 ||| || | || | | ||||| || || |||| || |||||||| || |||| Sbjct 4966074 TCCACAGCCTAAGTTGCACAAGGTCCTTCACTAGGTACTCGTTGACAACTTGGAATTCAC 4966133 Query 110688 CTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTAC 110747 | | || | ||| ||||| || | |||| ||||||||||||||||||| || Sbjct 4966134 CAGAAAGTACACGCCTCGCATAGATATTCGATGTGATTGGTTCAAAGCATTCATTAAAAC 4966193 Query 110748 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGC 110784 | | ||||| | || || ||||| ||||||||||| Sbjct 4966194 CAAGAATTTGCGATGTTGAAGCTGTGGGCATTGGTGC 4966230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031968598400