Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq2 118 1e-21 >seq1 Length=5930846 Score = 138 bits (152), Expect = 1e-27 Identities = 490/756 (65%), Gaps = 11/756 (1%) Strand=Plus/Plus Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || ||||| |||||||||| |||||| | || | ||||| ||||| |||||||| Sbjct 4966724 GATGCCAGGTTACACACAGCGGTCTCCTGTTTGGACGAGTACTGGATAATCTCCGTGCAT 4966783 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | || ||| ||||| || || | || ||||||||||| ||| ||||||| | ||| Sbjct 4966784 AGATTGGAAGATTTAATCGTACCAAGATTATTTTGATTTGATTTTCTGTTACAGGAATCT 4966843 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-C 118894 |||||||||||| |||| || || ||||| ||| | || | ||| || ||||| | Sbjct 4966844 TTGTAAAGCATGAATGGAGTTCCAGTCTCGACTTGAGTCTCTAAAATGGCAAACCAGAGC 4966903 Query 118895 ATC-GGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 || || ||| | | | || || |||| || || || |||| | | Sbjct 4966904 TTCTGGGCTCTGACCTTGCGAACATG--TCTGTTTTCTTTTTCATATCTTTTGTACAAAG 4966961 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 ||| || || ||||| | | || || | || || || | ||| || | || | Sbjct 4966962 TTTCGAATTCATCACCGTAGACGTCAGATAAACCAGGAGCTTCATCAGGTGAAAATAAGC 4967021 Query 119014 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073 |||||| | ||| |||||||| | || |||||||| || || | | Sbjct 4967022 ACCATTCTTGGTTGTTGCTTACCTTTTTCATGAACAAATCAGGGATCCAAAGAGCATAAA 4967081 Query 119074 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 119133 | | || ||| | |||||| | || ||||| || ||||| ||||| || | Sbjct 4967082 ACAAGTCTCGAGCTCTTAATTCTTCTTTGCCGTGATTTTTTCGTAACTCTAAAAACTCTA 4967141 Query 119134 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTACGACGACCA 119189 ||||| |||||| ||||||| ||| | || | | ||| ||| | |||| Sbjct 4967142 ATATATCACTGTGCCAAGGTTCCAAGTAAATAGCAAAAGCACCTGGTCTTTTG-TTACCA 4967200 Query 119190 GCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCG 119249 |||| | ||||||||| ||||| |||||| || | ||||| || | || |||| | Sbjct 4967201 CCCTGATCTACATACCTGGCAGTATTGTTAAAAACTCTTAGCATCGGCACAATTCCATTG 4967260 Query 119250 GATTGGCCATTTGTCCCCCGAATACGAG-ACTTATTGGCTCTGACATCGTGGATGTGCAT 119308 || |||||| |||| ||| || || | | | | || || || ||||| | Sbjct 4967261 GAGCTGCCATTACTCCCAGCAATGTAAGCACCCGTCGAC-CGGATATTATGAATGTGGAG 4967319 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 |||||| || ||||| |||||||| ||||| || | || | |||| || || Sbjct 4967320 ACCAATCCCACCTGCAGTTTTTGAGATCATAGCGCAGTCTTTTAGGGTATCGTAAATGCC 4967379 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 || || || || | || | || | | ||||||| ||| | |||||| | || || Sbjct 4967380 TTCTATGGAATCCTCTTTCATAGCTACCAAGAAGCAGGACGATAATTGAGGATTAGGCGT 4967439 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||| |||||| || ||||||| ||| ||| |||| Sbjct 4967440 GCCAGAGTTGAATAGTGTTGGTGACGCATGGGTGAA 4967475 Score = 107 bits (118), Expect = 2e-18 Identities = 296/454 (65%), Gaps = 0/454 (0%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| ||| | || || | ||| | |||||||| || || || | || Sbjct 4965777 TGAACTGAATAGGTGCAGAAGCTGCTTTCGTTCGTAAATAGTACATTCCTGTTTTTAACC 4965836 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 ||| ||||||| |||| | |||||| | | || || ||| ||| ||||| Sbjct 4965837 CCTTCTTCCAGCCATAAAAATGCATACTCGTGAGTTTTCCTGCAGTAGGATTTTTCATGA 4965896 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | | |||||||| || || ||||| || | || || || || || ||||| ||||| | Sbjct 4965897 AAATATTCATACTCTGAGACTGATCAATATAACGGCCACGGTCAGCTGCCATGTCAATAA 4965956 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 | |||| | | |||||| ||||| | || | | || | || | || || | Sbjct 4965957 TAACCTTTTGGCTCAATTCCCAGGCAGTCTTATATATATCTTTCAGCTCCTTGGGAATCT 4966016 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 | ||| ||||| || || ||| || | | | || | || | | ||||| || || Sbjct 4966017 CGGGGATGTTTTGAATAGAGCCATCCTCGCTAATAATCATATTCCTGATATCATTATTCC 4966076 Query 118105 AGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCG 118164 | || | || | || |||| ||| || | || |||||||| || ||||| | Sbjct 4966077 ACAGCCTAAGTTGCACAAGGTCCTTCACTAGGTACTCGTTGACAACTTGGAATTCACCAG 4966136 Query 118165 CGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCA 118224 || || ||| ||||||||| | ||| ||| |||||||| ||||| ||| | Sbjct 4966137 AAAGTACACGCCTCGCATAGATATTCGATGTGATTGGTTCAAAGCATTCATTAAAACCAA 4966196 Query 118225 AGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 118258 ||||| | ||| || ||||||||||| ||||| Sbjct 4966197 GAATTTGCGATGTTGAAGCTGTGGGCATTGGTGC 4966230 >seq2 Length=4956242 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | || || ||||| ||||| | ||| || ||||| |||||| Sbjct 3220016 GCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCA 3219957 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || ||||||||||||||||| || |||||| |||||||||||||| Sbjct 3219956 GGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAGAAGATA 3219897 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| || || || |||| ||||||||||||||| Sbjct 3219896 CCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAA 3219859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435169078240