Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq2 102 1e-16 >seq1 Length=5930846 Score = 107 bits (118), Expect = 2e-18 Identities = 283/432 (66%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580 || |||||||| ||||| || || | ||||| | ||| |||||||||||||||||| Sbjct 4966230 GCACCAATGCCCACAGCTTCAACATCGCAAATTCTTGGTTTTAATGAATGCTTTGAACCA 4966171 Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAG 105640 ||| |||| |||||| ||| | || | || || || |||||||| || Sbjct 4966170 ATCACATCGAATATCTATGCGAGGCGTGTACTTTCTGGTGAATTCCAAGTTGTCAACGAG 4966111 Query 105641 CATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATG 105700 | || ||| | ||||| | || | || ||| || ||||| | | || | || Sbjct 4966110 TACCTAGTGAAGGACCTTGTGCAACTTAGGCTGTGGAATAATGATATCAGGAATATGATT 4966051 Query 105701 GTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTG 105760 | | | || ||| || |||||||| || || ||||| || || | || | | Sbjct 4966050 ATTAGCGAGGATGGCTCTATTCAAAACATCCCCGAGATTCCCAAGGAGCTGAAAGATATA 4965991 Query 105761 TACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGT 105820 || || | |||||| | | |||| | | ||||||||||| || || ||||| Sbjct 4965990 TATAAGACTGCCTGGGAATTGAGCCAAAAGGTTATTATTGACATGGCAGCTGACCGTGGC 4965931 Query 105821 CGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAG 105880 || | |||||||| ||| ||||||||| | |||||| ||| ||| || || Sbjct 4965930 CGTTATATTGATCAGTCTCAGAGTATGAATATTTTCATGAAAAATCCTACTGCAGGAAAA 4965871 Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 105940 ||| | |||||| | || | ||||||||||| | ||||| || ||||| || | Sbjct 4965870 CTCACGAGTATGCATTTTTATGGCTGGAAGAAGGGGTTAAAAACAGGAATGTACTATTTA 4965811 Query 105941 CGATCTAAGGCA 105952 ||| | || ||| Sbjct 4965810 CGAACGAAAGCA 4965799 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 || ||||| ||||||||| || |||| ||||||||||||||| |||||||| ||| Sbjct 4966883 AGACTCAAGTCGAGACTGGAACTCCATTCATGCTTTACAAAGATTCCTGTAACAGAAAAT 4966824 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 |||||||| ||| | ||| ||| || ||||||||| || || || || | | | Sbjct 4966823 CAAATCAAAATAATCTTGGTACGATTAAATCTTCCAATCTATGCACGGAGATTATCCAGT 4966764 Query 105024 TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063 | |||| | ||||| |||||||||||||| ||||| Sbjct 4966763 ACTCGTCCAAACAGGAGACCGCTGTGTGTAACCTGGCATC 4966724 >seq2 Length=4956242 Score = 102 bits (112), Expect = 1e-16 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGC 94792 |||| |||||| | ||||| || || |||||| | ||| ||| | | | |||| Sbjct 3219797 TTCCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCTGATGATCAGTCCA 3219856 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 || |||||||||| ||| | || ||||| ||||||||||||||||||||||| | Sbjct 3219857 CTT---TTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGAT 3219913 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 | || | ||| | ||| | |||||||| || |||||||| ||||| ||||| | Sbjct 3219914 CATTTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAA 3219973 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| | ||||| ||||| || || | ||| || ||||| Sbjct 3219974 ACGAATTGATCTCGCGTGATGAAGGCATGCACACCGATTTTGC 3220016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260770836960