Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-18
seq2 102 1e-16
>seq1
Length=5930846
Score = 107 bits (118), Expect = 2e-18
Identities = 283/432 (66%), Gaps = 0/432 (0%)
Strand=Plus/Minus
Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580
|| |||||||| ||||| || || | ||||| | ||| ||||||||||||||||||
Sbjct 4966230 GCACCAATGCCCACAGCTTCAACATCGCAAATTCTTGGTTTTAATGAATGCTTTGAACCA 4966171
Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAG 105640
||| |||| |||||| ||| | || | || || || |||||||| ||
Sbjct 4966170 ATCACATCGAATATCTATGCGAGGCGTGTACTTTCTGGTGAATTCCAAGTTGTCAACGAG 4966111
Query 105641 CATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATG 105700
| || ||| | ||||| | || | || ||| || ||||| | | || | ||
Sbjct 4966110 TACCTAGTGAAGGACCTTGTGCAACTTAGGCTGTGGAATAATGATATCAGGAATATGATT 4966051
Query 105701 GTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTG 105760
| | | || ||| || |||||||| || || ||||| || || | || | |
Sbjct 4966050 ATTAGCGAGGATGGCTCTATTCAAAACATCCCCGAGATTCCCAAGGAGCTGAAAGATATA 4965991
Query 105761 TACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGT 105820
|| || | |||||| | | |||| | | ||||||||||| || || |||||
Sbjct 4965990 TATAAGACTGCCTGGGAATTGAGCCAAAAGGTTATTATTGACATGGCAGCTGACCGTGGC 4965931
Query 105821 CGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAG 105880
|| | |||||||| ||| ||||||||| | |||||| ||| ||| || ||
Sbjct 4965930 CGTTATATTGATCAGTCTCAGAGTATGAATATTTTCATGAAAAATCCTACTGCAGGAAAA 4965871
Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 105940
||| | |||||| | || | ||||||||||| | ||||| || ||||| || |
Sbjct 4965870 CTCACGAGTATGCATTTTTATGGCTGGAAGAAGGGGTTAAAAACAGGAATGTACTATTTA 4965811
Query 105941 CGATCTAAGGCA 105952
||| | || |||
Sbjct 4965810 CGAACGAAAGCA 4965799
Score = 100 bits (110), Expect = 3e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963
|| ||||| ||||||||| || |||| ||||||||||||||| |||||||| |||
Sbjct 4966883 AGACTCAAGTCGAGACTGGAACTCCATTCATGCTTTACAAAGATTCCTGTAACAGAAAAT 4966824
Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023
|||||||| ||| | ||| ||| || ||||||||| || || || || | | |
Sbjct 4966823 CAAATCAAAATAATCTTGGTACGATTAAATCTTCCAATCTATGCACGGAGATTATCCAGT 4966764
Query 105024 TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063
| |||| | ||||| |||||||||||||| |||||
Sbjct 4966763 ACTCGTCCAAACAGGAGACCGCTGTGTGTAACCTGGCATC 4966724
>seq2
Length=4956242
Score = 102 bits (112), Expect = 1e-16
Identities = 158/223 (71%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGC 94792
|||| |||||| | ||||| || || |||||| | ||| ||| | | | ||||
Sbjct 3219797 TTCCATGTATTAAGAAGAAGGCTGACTGGGCTCTCCGATGGATTGCTGATGATCAGTCCA 3219856
Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
|| |||||||||| ||| | || ||||| ||||||||||||||||||||||| |
Sbjct 3219857 CTT---TTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGAT 3219913
Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
| || | ||| | ||| | |||||||| || |||||||| ||||| ||||| |
Sbjct 3219914 CATTTGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAA 3219973
Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||| | ||||| ||||| || || | ||| || |||||
Sbjct 3219974 ACGAATTGATCTCGCGTGATGAAGGCATGCACACCGATTTTGC 3220016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260770836960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |