Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=4956242 Score = 114 bits (126), Expect = 1e-20 Identities = 826/1318 (63%), Gaps = 50/1318 (4%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| ||||| || |||||| |||||||| || | || || | || || Sbjct 3634053 GTAGATGTTGGATGTGTAAGGTTCGAAACATTCGTTGTTACCAAGAATTTGTGATGTTGA 3633994 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||| || ||||| || || || || || || || | ||||||||| | |||| Sbjct 3633993 GGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTTCTCAGACCATGCTTAGCCATCTTCTT 3633934 Query 78654 CTTTAG----GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| || ||| |||||| | ||| | | | ||| |||||| || ||| | Sbjct 3633933 CTTGAGAGCAGCCCAGTCCCAGAGATCAGTGGGAGTGATATCCCACAAATCAAATTGCAA 3633874 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 | ||||| || || || || || | | | ||||| || | ||| | | | |||||| Sbjct 3633873 AAGACCCTTTGAGGCAGGAGAACCTTGGTAAGTCTCATAGGGTCCGTACAATTCGGCGAG 3633814 Query 78768 TTCGC---ATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCG--AAGATGCCCTTGTTG 78822 ||| | || || | ||| | || || || | | ||| || || | ||| Sbjct 3633813 TTCAACCGAAGATTCAA-CAG--CAGCATGATAGATGGTCTCAGCAATTTGAAC--GTTC 3633759 Query 78823 A---GCTCGCGCGCCTTGGTCTCGTCGAACG--AAAGGCCGAGCATCATGAAGACATCGG 78877 | ||| | |||| | |||||| | ||| | |||| ||| ||| |||||| Sbjct 3633758 AATTGCTTG---GCCTCAGGGGAGTCGAATGGCAAACGGAGAGC--CATAAAGGCATCGG 3633704 Query 78878 CCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT-CTTTCGGGCCGCC 78936 ||| || || | || | ||| || |||| ||| || | ||||| ||||| | | || Sbjct 3633703 CCAAACCTTGAATACCAAGAGCAATGGGTCTGTGACGGAAATTGCTTCTTTCAG-CTTCC 3633645 Query 78937 TCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTC 78996 | | ||||||||||| | || || | |||| ||| | ||||| ||| | Sbjct 3633644 TTGACAGGGTAAAAGTTTCTGTCAATAATAACATTCAAGTTTCTAGTGACAACCTTGGCA 3633585 Query 78997 ACCTCGTACAATTTGGCGAAATCA------AAA------TGATTTCCTTTGATGAAAGTC 79044 ||||||| | |||| || | | ||| | || | || | ||||| Sbjct 3633584 ACCTCGTGAAGTTTGTTAAAGTTATACCACAAACCTTCCTCATCACTTTCAACGAAAGCA 3633525 Query 79045 GGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATG 79104 ||||| ||| |||||||| || || ||||| || || || ||| ||| | Sbjct 3633524 GGTAGAGACAACGATGCCAAATTACAGACGGCAACTTCTTCAGGAGAAGAGTACTCAACA 3633465 Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||| |||||| || || |||||||| || || | ||| | ||||| ||||| Sbjct 3633464 ATTTCACAGCACAAGTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTTACTCTTGCTA 3633405 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACG 79224 ||||| || ||||| || |||| | || | || |||||| ||| | ||||| Sbjct 3633404 TTACAAGCATCCTTATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGCTTCGAGAATA 3633345 Query 79225 CCGTCCCAGATGTCCCGGGCCCGGACAAC-CTTCT---TGTACCGACCCTGTGCGACGTA 79280 | | ||| | | ||||| || ||||| | |||| || | | |||| Sbjct 3633344 GCATACCACAGCTTTTGGGCCTTGATGGTTCTTCTGCCTCTACCTTCCTTCT----CGTA 3633289 Query 79281 CGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTG 79340 | || || | | ||| | || ||||||||||| || ||| || ||||| | Sbjct 3633288 CTTCTCATAAAGAGCAACGAACTCGTCACCATAGACATCATCCAAGCCAGGACACTCATT 3633229 Query 79341 CGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGAT 79400 || ||||||| ||| ||||||| || || ||| |||||| | ||| || || Sbjct 3633228 GGGACACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCAGGAAT 3633169 Query 79401 CCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAG 79460 ||| || ||| ||| | || | | ||| | || || | || || ||| ||||| Sbjct 3633168 CCATAGAGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTTACCGTGATTCTTTCGCAG 3633109 Query 79461 CTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTT 79520 ||| | || || | | || | ||||| ||||||| || ||||| || | ||| Sbjct 3633108 CTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAAGCACCTGG 3633049 Query 79521 GCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGG 79580 ||||| || ||||| | || || | || || || |||||||||| | |||||| Sbjct 3633048 TCGCTTATTACCACCCTGATCAACATATCTAGCAGTATTATTGAAAACTCTCAACATGGG 3632989 Query 79581 CACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTT 79640 || || |||| | | ||||| || || || | || | || || || || Sbjct 3632988 AACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCACGGATATT 3632929 Query 79641 -CGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCG 79699 || || | | || || || || | |||| || || || || ||| | | Sbjct 3632928 ATGAACACT-CAAACCAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTCTTCAAAG 3632870 Query 79700 TCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCT 79759 | ||||| ||||| || || || ||||||||||| |||| |||||| ||||| | Sbjct 3632869 TATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAACCAAGAAGCAAGAGGACATTT 3632810 Query 79760 GTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTG 79817 | || ||| ||||| || ||| | || || || | || || || || ||||||| Sbjct 3632809 GAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGCATGTGTAAAATACTTTTG 3632752 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| | |||||| | || ||||| ||| || || |||||||||||||| || || Sbjct 3219859 TTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATT- 3219917 Query 60033 TGTGC---TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||| ||| |||||| | || |||||||| |||||||| || |||| ||||| ||| Sbjct 3219918 --TGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAAC 3219975 Query 60090 GAGCTGATTTCCCGGGACGAGGGC 60113 || |||| || || || || ||| Sbjct 3219976 GAATTGATCTCGCGTGATGAAGGC 3219999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524772573760