Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 1e-20
>seq2
Length=4956242
Score = 114 bits (126), Expect = 1e-20
Identities = 826/1318 (63%), Gaps = 50/1318 (4%)
Strand=Plus/Minus
Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593
||||||||||| ||||| || |||||| |||||||| || | || || | || ||
Sbjct 3634053 GTAGATGTTGGATGTGTAAGGTTCGAAACATTCGTTGTTACCAAGAATTTGTGATGTTGA 3633994
Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653
||| || ||||| || || || || || || || | ||||||||| | ||||
Sbjct 3633993 GGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTTCTCAGACCATGCTTAGCCATCTTCTT 3633934
Query 78654 CTTTAG----GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707
||| || ||| |||||| | ||| | | | ||| |||||| || ||| |
Sbjct 3633933 CTTGAGAGCAGCCCAGTCCCAGAGATCAGTGGGAGTGATATCCCACAAATCAAATTGCAA 3633874
Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767
| ||||| || || || || || | | | ||||| || | ||| | | | ||||||
Sbjct 3633873 AAGACCCTTTGAGGCAGGAGAACCTTGGTAAGTCTCATAGGGTCCGTACAATTCGGCGAG 3633814
Query 78768 TTCGC---ATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCG--AAGATGCCCTTGTTG 78822
||| | || || | ||| | || || || | | ||| || || | |||
Sbjct 3633813 TTCAACCGAAGATTCAA-CAG--CAGCATGATAGATGGTCTCAGCAATTTGAAC--GTTC 3633759
Query 78823 A---GCTCGCGCGCCTTGGTCTCGTCGAACG--AAAGGCCGAGCATCATGAAGACATCGG 78877
| ||| | |||| | |||||| | ||| | |||| ||| ||| ||||||
Sbjct 3633758 AATTGCTTG---GCCTCAGGGGAGTCGAATGGCAAACGGAGAGC--CATAAAGGCATCGG 3633704
Query 78878 CCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT-CTTTCGGGCCGCC 78936
||| || || | || | ||| || |||| ||| || | ||||| ||||| | | ||
Sbjct 3633703 CCAAACCTTGAATACCAAGAGCAATGGGTCTGTGACGGAAATTGCTTCTTTCAG-CTTCC 3633645
Query 78937 TCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTC 78996
| | ||||||||||| | || || | |||| ||| | ||||| ||| |
Sbjct 3633644 TTGACAGGGTAAAAGTTTCTGTCAATAATAACATTCAAGTTTCTAGTGACAACCTTGGCA 3633585
Query 78997 ACCTCGTACAATTTGGCGAAATCA------AAA------TGATTTCCTTTGATGAAAGTC 79044
||||||| | |||| || | | ||| | || | || | |||||
Sbjct 3633584 ACCTCGTGAAGTTTGTTAAAGTTATACCACAAACCTTCCTCATCACTTTCAACGAAAGCA 3633525
Query 79045 GGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATG 79104
||||| ||| |||||||| || || ||||| || || || ||| ||| |
Sbjct 3633524 GGTAGAGACAACGATGCCAAATTACAGACGGCAACTTCTTCAGGAGAAGAGTACTCAACA 3633465
Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164
||||| |||||| || || |||||||| || || | ||| | ||||| |||||
Sbjct 3633464 ATTTCACAGCACAAGTTGGAGGACTTGATAGTACCCAAGTTTTGTTGGTTACTCTTGCTA 3633405
Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACG 79224
||||| || ||||| || |||| | || | || |||||| ||| | |||||
Sbjct 3633404 TTACAAGCATCCTTATAAAGCATGAATGGGTTACCAGTCTCAGTTTGAGCTTCGAGAATA 3633345
Query 79225 CCGTCCCAGATGTCCCGGGCCCGGACAAC-CTTCT---TGTACCGACCCTGTGCGACGTA 79280
| | ||| | | ||||| || ||||| | |||| || | | ||||
Sbjct 3633344 GCATACCACAGCTTTTGGGCCTTGATGGTTCTTCTGCCTCTACCTTCCTTCT----CGTA 3633289
Query 79281 CGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTG 79340
| || || | | ||| | || ||||||||||| || ||| || ||||| |
Sbjct 3633288 CTTCTCATAAAGAGCAACGAACTCGTCACCATAGACATCATCCAAGCCAGGACACTCATT 3633229
Query 79341 CGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGAT 79400
|| ||||||| ||| ||||||| || || ||| |||||| | ||| || ||
Sbjct 3633228 GGGACACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATGAACAAGTCAGGAAT 3633169
Query 79401 CCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAG 79460
||| || ||| ||| | || | | ||| | || || | || || ||| |||||
Sbjct 3633168 CCATAGAGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTTACCGTGATTCTTTCGCAG 3633109
Query 79461 CTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTT 79520
||| | || || | | || | ||||| ||||||| || ||||| || | |||
Sbjct 3633108 CTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGTACATGGCAAAAGCACCTGG 3633049
Query 79521 GCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGG 79580
||||| || ||||| | || || | || || || |||||||||| | ||||||
Sbjct 3633048 TCGCTTATTACCACCCTGATCAACATATCTAGCAGTATTATTGAAAACTCTCAACATGGG 3632989
Query 79581 CACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTT 79640
|| || |||| | | ||||| || || || | || | || || || ||
Sbjct 3632988 AACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCACGGATATT 3632929
Query 79641 -CGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCG 79699
|| || | | || || || || | |||| || || || || ||| | |
Sbjct 3632928 ATGAACACT-CAAACCAATACCACCAGCAGACTTTGAAATCAAGGCACAAGTCTTCAAAG 3632870
Query 79700 TCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCT 79759
| ||||| ||||| || || || ||||||||||| |||| |||||| ||||| |
Sbjct 3632869 TATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAACCAAGAAGCAAGAGGACATTT 3632810
Query 79760 GTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTG 79817
| || ||| ||||| || ||| | || || || | || || || || |||||||
Sbjct 3632809 GAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGCATGTGTAAAATACTTTTG 3632752
Score = 89.7 bits (98), Expect = 6e-13
Identities = 107/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
||||| | |||||| | || ||||| ||| || || |||||||||||||| || ||
Sbjct 3219859 TTTGCTGAGCGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCTCTGGATCATT- 3219917
Query 60033 TGTGC---TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089
||| ||| |||||| | || |||||||| |||||||| || |||| ||||| |||
Sbjct 3219918 --TGCCAGTATCTTCTGGTTGAAGAAGCGTGGACTCATGCCTGGTCTGACGTTCTCAAAC 3219975
Query 60090 GAGCTGATTTCCCGGGACGAGGGC 60113
|| |||| || || || || |||
Sbjct 3219976 GAATTGATCTCGCGTGATGAAGGC 3219999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524772573760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |