Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2 95.1 1e-14
>seq2
Length=4956242
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803
||| || |||||| || | ||||||| | ||||| ||| ||||||||||| ||| |
Sbjct 3634221 GACTGTTTGGGAGCTTTCTCAGAAGACAATCATTGATATGGCTGCTGATCGTGCTGCCTT 3634280
Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863
||||| || || ||| ||||||| | ||| | |||| | ||| ||| ||||
Sbjct 3634281 TATCGATCAAAGTCAATCTTTGAACATTTACATTCAAGCTCCTACTATGGGCAAATTGA- 3634339
Query 55864 CTCG-ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGA 55922
|| | ||||| || ||||| ||| | ||||| || ||||| || |||||||| |||| |
Sbjct 3634340 CTAGTATGCATTTCTACGGCTGGCAAAAGGGTCTTAAGACAGGAATGTACTACTTGCGTA 3634399
Query 55923 C 55923
|
Sbjct 3634400 C 3634400
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/135 (75%), Gaps = 6/135 (4%)
Strand=Plus/Minus
Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827
||||||||| | |||||||| || || |||| || |||||||| |||||||||||
Sbjct 3219999 GCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAGGCATGAGTCCACGCTT 3219940
Query 74828 CTTCAACCAAAAGA---TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGC 74884
||||||||| |||| ||||| || || ||| ||||||||| || || || ||
Sbjct 3219939 CTTCAACCAGAAGATACTGGCA---AATGATCCAGAGAAGAAGATACCCTCAACGGCAGC 3219883
Query 74885 AAAGGCGACAAGGCG 74899
|||||| || || ||
Sbjct 3219882 AAAGGCAACGAGACG 3219868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215972639200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |