Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=4956242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || |||||| || | ||||||| | ||||| ||| ||||||||||| ||| | Sbjct 3634221 GACTGTTTGGGAGCTTTCTCAGAAGACAATCATTGATATGGCTGCTGATCGTGCTGCCTT 3634280 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 ||||| || || ||| ||||||| | ||| | |||| | ||| ||| |||| Sbjct 3634281 TATCGATCAAAGTCAATCTTTGAACATTTACATTCAAGCTCCTACTATGGGCAAATTGA- 3634339 Query 55864 CTCG-ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGA 55922 || | ||||| || ||||| ||| | ||||| || ||||| || |||||||| |||| | Sbjct 3634340 CTAGTATGCATTTCTACGGCTGGCAAAAGGGTCTTAAGACAGGAATGTACTACTTGCGTA 3634399 Query 55923 C 55923 | Sbjct 3634400 C 3634400 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||| | |||||||| || || |||| || |||||||| ||||||||||| Sbjct 3219999 GCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTCAGACCAGGCATGAGTCCACGCTT 3219940 Query 74828 CTTCAACCAAAAGA---TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGC 74884 ||||||||| |||| ||||| || || ||| ||||||||| || || || || Sbjct 3219939 CTTCAACCAGAAGATACTGGCA---AATGATCCAGAGAAGAAGATACCCTCAACGGCAGC 3219883 Query 74885 AAAGGCGACAAGGCG 74899 |||||| || || || Sbjct 3219882 AAAGGCAACGAGACG 3219868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215972639200