Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 206 3e-48 seq2 197 2e-45 >seq3 Length=2773601 Score = 206 bits (228), Expect = 3e-48 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || |||||||||||||| || ||||| || | Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||| ||||||||||| |||||||||||||| Sbjct 154637 GATACTATTGATAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAA 154696 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| |||||||||||||||||||||| ||||| || | ||||| || Sbjct 154697 CAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAAC 154756 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||||||||| || ||||| | ||||| || ||||| Sbjct 154757 ATTCAAAAGGAATCCACTCTCCACTTAGTCCTCCGTCTCCGTGGTGG 154803 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || || ||||| || || || || || ||||| | Sbjct 154349 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCT 154408 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| |||| || || ||||||||||| |||||||||||||| Sbjct 154409 GATACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAA 154468 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||||||||||||||||||||||| |||||| || | ||||| || Sbjct 154469 CAAAGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 154528 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| |||||||| |||| | ||||| || ||||| Sbjct 154529 ATTCAAAAGGAATCTACTCTTCACTTAGTTCTCCGTCTCCGTGGTGG 154575 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || |||||||||||||| || || ||||| | Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| |||| ||||| |||||||| || |||||||||||||| Sbjct 154865 GATACTATCGACAACGTCAAGACTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154924 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| |||||||||||| | || || | ||||| || | |||||||| Sbjct 154925 CAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAAC 154984 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| ||||| || | ||| | |||||||| ||||| Sbjct 154985 ATCCAAAAGGAATCTACTCTCCACTTGGTCCTCCGTCTTCGTGGTGG 155031 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| ||||||||||| |||||||| | Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | |||||||| |||||||| || |||||||||||||| Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 154240 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || |||||||||||||||||| | || |||| | ||| | | || || || Sbjct 154241 CAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAAC 154300 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||||||||| || | || | |||||||| ||||| Sbjct 154301 ATTCAAAAGGAATCCACTCTCCACTTGGTTCTTCGTCTTCGTGGTGG 154347 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || || ||||| || ||||||||||||||||| Sbjct 153892 AATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTTGAGTCCTC 153951 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | ||| | || ||||| |||||||| || |||||||||||||| Sbjct 153952 TGATACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154011 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || |||||||||||||||||| | || |||| | ||| | | || || || Sbjct 154012 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154071 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||||||||| |||||||| | || | |||||||| ||||| Sbjct 154072 TATTCAAAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTCGTGGTGG 154119 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || |||||||| || || ||||| ||||| Sbjct 155033 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACGCTCGAGGTCGAGTCTTCG 155092 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| | || || || ||||||||||| ||||| |||||||| Sbjct 155093 GACACCATTGATAATGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAA 155152 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| |||||||| ||||| || | |||||| || | ||||| || Sbjct 155153 CAAAGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGTACTCTCTCCGACTACAAC 155212 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | ||| | |||||||| || || Sbjct 155213 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTTCGTGGCGG 155259 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| ||||| || ||||| || || || ||||| ||||| || | |||| Sbjct 1977481 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 1977540 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || || ||||||||||||||||| ||||| || || ||||| Sbjct 1977541 GACAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCTT 1977600 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || ||||||||||||||||||| | ||||| | ||||| || | |||||| Sbjct 1977601 ATCTTCGCCGGTAAGCAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAAG 1977660 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| || || ||| | ||| | | ||||| Sbjct 1977661 GAGTCGACTCTCCACCTTGTCCTCCGTTTGAGAGGTGG 1977698 >seq2 Length=4956242 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| |||||||| |||||||| || |||||||||||||| Sbjct 2346126 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTCTTCC 2346067 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || || ||||||||||||||||| ||||| || Sbjct 2346066 GACACTATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 2346007 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||||||||||||||| ||||||| ||||||||| | ||||| || Sbjct 2346006 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACAAC 2345947 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| || || ||| | ||||| || ||||| Sbjct 2345946 ATCCAAAAGGAGTCTACTCTCCACCTTGTCCTCCGTCTCCGTGGTGG 2345900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310371484480