Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 >seq3 Length=2773601 Score = 111 bits (122), Expect = 1e-19 Identities = 366/565 (65%), Gaps = 22/565 (4%) Strand=Plus/Plus Query 29873 TTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCT 29932 || |||| ||| || | || |||||| ||||| || |||| |||| | ||| || Sbjct 791453 TTGAGCGCTTCAACATGGTCTGCGTAGACATGAGCATCGCCCATTGTGTGAATAAAATCA 791512 Query 29933 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29992 || ||||| || || | ||| ||||| | ||| | | || || ||| || Sbjct 791513 CCACATTCTATTCCACAAACCTTAGCGATCATCTTCGTTAACAAAGCATAAGAGGCAATA 791572 Query 29993 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 30052 ||||| || || || | ||||| || | || || || | |||||| || |||||| Sbjct 791573 TTAAATGGCACTCCCAAGCCCATATCACAACTTCTTTGATATAACTGACAAGAAAGCTCT 791632 Query 30053 ------------CCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCC 30100 | | ||| || ||||||||| | | |||| || || ||||||||| Sbjct 791633 GGCTTACCATTACGGAAGCTTACATAAAACTGAGAAAATACGTGACAAGGTGGAAGAGCC 791692 Query 30101 ATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTG 30160 || | || || ||| ||||| || ||| ||| || || ||||| | ||| | Sbjct 791693 ATATCGTTCATATCGGCGGGATTCCATGCTGACATGATTATTCGTCTGTCATATGGTGTC 791752 Query 30161 TTCCTGATGAG--GTC-CACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTC 30216 | | |||| || ||| || ||| || ||||| || || | || ||||| || Sbjct 791753 TCCTTGATTTTTCGTATCAC----TTCTGCCAGTTGATCTACTCCTTTACCAGAGTAATC 791808 Query 30217 TGCC-CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30275 | | || ||| || | || || ||||| ||||| ||||| || ||||| |||| Sbjct 791809 AGTATCGCAA-TCCTCATATTTGGCGCCAAAATGTCTCCATTGGAAACCATACACGGGTC 791867 Query 30276 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30335 | || |||||||| ||||| || | || | |||||||||||| |||| || | Sbjct 791868 CAAGATCTCCCTCACGTCTGTGTTCTAGTCCTCGCTTGTCCAAAAACTCTCGACTTCCAT 791927 Query 30336 TGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 || | ||||| || | || || | ||||| ||| ||| || | || |||||| ||| Sbjct 791928 TGCCATCCCAAATATGAACGCCTCTGTCAGAAAGCAATTTCGAATCAGTAGACCCTTTGA 791987 Query 30396 CGAACCACAGCAGCTCCTCCACGAC 30420 | ||||| | || || |||| ||| Sbjct 791988 CAAACCATAATAGTTCTTCCAAGAC 792012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310380192368