Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq3 172 1e-37
seq2 158 3e-33
>seq3
Length=2773601
Score = 172 bits (190), Expect = 1e-37
Identities = 160/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| ||||| ||||| ||||| ||||| || || | |||||| || |||||
Sbjct 1977683 AGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCC 1977624
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || ||||||||||| |||||||| || || |||| ||| ||||||||
Sbjct 1977623 TCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 1977564
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || |||||||| || || |||||||| ||||| |||
Sbjct 1977563 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 1977504
Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105
|| || || || ||||| || ||
Sbjct 1977503 TTACCAGTAAGGGTCTTGACGAA 1977481
Score = 163 bits (180), Expect = 7e-35
Identities = 170/223 (76%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||||||||| || || ||||| || || ||||| | | |||
Sbjct 154114 ACGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGT 154055
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|| |||||||| | ||||| || || || ||||| | ||||||||| ||||||| ||
Sbjct 154054 TCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACC 153995
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || ||||| || || || ||||| || |||||| |||||||| ||
Sbjct 153994 TTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAG 153935
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|||||| ||||| || ||||| |||||||| || | ||||||
Sbjct 153934 AGTGATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATT 153892
Score = 152 bits (168), Expect = 1e-31
Identities = 169/223 (76%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| |||||||| || ||||| ||||| ||||| | | |||
Sbjct 154342 ACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGT 154283
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|| |||||||| | ||||| || || || ||||| | ||||||||| ||||||| ||
Sbjct 154282 TCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACC 154223
Query 211013 TTCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
||||||||| || || ||| || || || || || || || |||||| ||||| || |
Sbjct 154222 TTCCTTGTCTTGAAT-TTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAA 154164
Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||| || ||||| || ||||| |||||||| || | |||||
Sbjct 154163 GAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| | ||| ||||| || || |||||||||||||| || | || ||
Sbjct 155026 ACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGT 154967
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||||| ||||| || ||||| || | || |||||||| ||||||| ||
Sbjct 154966 ACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACC 154907
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||| || ||||| || ||||| ||||| || |||||| || || |||||
Sbjct 154906 TTCCTTGTCTTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAG 154847
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || ||||| || || | |||||| || || | |||||
Sbjct 154846 AGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805
>seq2
Length=4956242
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| ||||| ||||| ||||||||||| || || | |||||| | |||||
Sbjct 2345915 AGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCC 2345974
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || ||||| | |||||||| || || |||| ||| ||||||||
Sbjct 2345975 TCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 2346034
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||| ||||| || |||||||| || ||||| |||
Sbjct 2346035 TGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTC 2346094
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | |||||
Sbjct 2346095 TTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126
Score = 100 bits (110), Expect = 7e-16
Identities = 196/290 (68%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147
|| ||||| | |||||| ||||| || | ||||| || || ||||| || |
Sbjct 3633431 CCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATCCTTATAAAGCATGAATGGGTTA 3633372
Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207
|| ||||| |||||| ||||||| || ||| |||| ||||| || || ||
Sbjct 3633371 CCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAGCTTTTGGGCCTTGATGGTTCTT 3633312
Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267
|| || | ||||| ||||||||||| | || || | |||| || |||||||||
Sbjct 3633311 CTGCCTCTACCTTCCTTCTCGTACTTCTCATAAAGAGCAACGAACTCGTCACCATAGACA 3633252
Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327
||||| | || ||| ||||||||| || | | | |||| | ||| |||| |||
Sbjct 3633251 TCATCCAAGCCAGGACACTCATTGGGACACATCAAAGTCCAATCCTCGTTAGCCTTGACT 3633192
Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGC 178377
| |||||||| | ||||| |||| | || |||| | ||||||||
Sbjct 3633191 CTCTTCATGAACAAGTCAGGAATCCATAGAGCCAAGAACAAATCTCTGGC 3633142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151940593460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |