Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 172 1e-37 seq2 158 3e-33 >seq3 Length=2773601 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| ||||| ||||| || || | |||||| || ||||| Sbjct 1977683 AGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCC 1977624 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || ||||||||||| |||||||| || || |||| ||| |||||||| Sbjct 1977623 TCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 1977564 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| || || |||||||| ||||| ||| Sbjct 1977563 TGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTC 1977504 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || || || || ||||| || || Sbjct 1977503 TTACCAGTAAGGGTCTTGACGAA 1977481 Score = 163 bits (180), Expect = 7e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||||||| || || ||||| || || ||||| | | ||| Sbjct 154114 ACGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGT 154055 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||||| | ||||| || || || ||||| | ||||||||| ||||||| || Sbjct 154054 TCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACC 153995 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || || || ||||| || |||||| |||||||| || Sbjct 153994 TTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAG 153935 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| ||||| || ||||| |||||||| || | |||||| Sbjct 153934 AGTGATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATT 153892 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| |||||||| || ||||| ||||| ||||| | | ||| Sbjct 154342 ACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGT 154283 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||||| | ||||| || || || ||||| | ||||||||| ||||||| || Sbjct 154282 TCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACC 154223 Query 211013 TTCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||||| || || ||| || || || || || || || |||||| ||||| || | Sbjct 154222 TTCCTTGTCTTGAAT-TTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAA 154164 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || ||||| || ||||| |||||||| || | ||||| Sbjct 154163 GAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||| ||||| || || |||||||||||||| || | || || Sbjct 155026 ACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGT 154967 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||| ||||| || ||||| || | || |||||||| ||||||| || Sbjct 154966 ACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACC 154907 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || ||||| ||||| || |||||| || || ||||| Sbjct 154906 TTCCTTGTCTTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAG 154847 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || | |||||| || || | ||||| Sbjct 154846 AGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805 >seq2 Length=4956242 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| ||||||||||| || || | |||||| | ||||| Sbjct 2345915 AGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCC 2345974 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| | |||||||| || || |||| ||| |||||||| Sbjct 2345975 TCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCT 2346034 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||| ||||| || |||||||| || ||||| ||| Sbjct 2346035 TGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTC 2346094 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 2346095 TTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126 Score = 100 bits (110), Expect = 7e-16 Identities = 196/290 (68%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 || ||||| | |||||| ||||| || | ||||| || || ||||| || | Sbjct 3633431 CCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATCCTTATAAAGCATGAATGGGTTA 3633372 Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207 || ||||| |||||| ||||||| || ||| |||| ||||| || || || Sbjct 3633371 CCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAGCTTTTGGGCCTTGATGGTTCTT 3633312 Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267 || || | ||||| ||||||||||| | || || | |||| || ||||||||| Sbjct 3633311 CTGCCTCTACCTTCCTTCTCGTACTTCTCATAAAGAGCAACGAACTCGTCACCATAGACA 3633252 Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327 ||||| | || ||| ||||||||| || | | | |||| | ||| |||| ||| Sbjct 3633251 TCATCCAAGCCAGGACACTCATTGGGACACATCAAAGTCCAATCCTCGTTAGCCTTGACT 3633192 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGC 178377 | |||||||| | ||||| |||| | || |||| | |||||||| Sbjct 3633191 CTCTTCATGAACAAGTCAGGAATCCATAGAGCCAAGAACAAATCTCTGGC 3633142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151940593460