Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq3 116 3e-21
seq2 98.7 7e-16
>seq3
Length=2773601
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || |||||||| || || || || ||||| |||||||| ||| |
Sbjct 154121 ATGCAAATCTTCGTAAAGACCCTCACTGGTAAGACCATTACTCTTGAAGTTGAGTCCTCT 154180
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| |||| ||| |||| || |||| || ||||| |||||| | || ||||| ||
Sbjct 154181 GATACTATTGATAATGTTAAGACCAAAA-TTCAAGACAAGGAAGGTATTCCTCCAGACCA 154239
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| || || ||| | ||||| | | || || ||||||||
Sbjct 154240 ACAAAGACTTATTTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGATTACAA 154299
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| ||||| || ||||| | || || |||
Sbjct 154300 CATTCAAAAGGAATCCACTCTCCACTTGGTT 154330
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || | || || || || || |||||||||||||| ||| |
Sbjct 154577 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTTGAATCCTCT 154636
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| |||| || | || || || ||| ||||| || ||| | || ||||| ||
Sbjct 154637 GATACTATTGATAACGTCAAGAC-CAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCA 154695
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||||| || || || || || ||||| || || | || ||| | ||| |||||
Sbjct 154696 ACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTCTCCGACTACAA 154755
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| || ||||| | || |||||
Sbjct 154756 CATTCAAAAGGAATCCACTCTCCACTTAGT 154785
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || | || || || || || ||||||||||| || ||| |
Sbjct 154805 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACTATTACTCTCGAAGTCGAGTCCTCT 154864
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| | || || | || || || ||| ||||| |||||| | || ||||| ||
Sbjct 154865 GATACTATCGACAACGTCAAGAC-TAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 154923
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||||| || || || || || ||| ||||||||| || ||| | ||| || ||
Sbjct 154924 ACAGCGTTTGATTTTCGCTGGTAAGCAATTGGAAGACGGCCGTACTCTCTCCGACTATAA 154983
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| || || ||
Sbjct 154984 CATCCAAAAGGAATCTAC 155001
>seq2
Length=4956242
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || ||||| || || || || ||||| || || ||||| || |
Sbjct 2346126 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTCTTCC 2346067
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || ||| | || || || | | ||||| || || | || ||||||||
Sbjct 2346066 GACACTATCGACAATGTCAAGACCAAGA-TCCAAGACAAGGAGGGAATTCCCCCAGATCA 2346008
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || ||||| || || ||||| || || | || || | || |||||
Sbjct 2346007 ACAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACAA 2345948
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| ||||| ||
Sbjct 2345947 CATCCAAAAGGAGTCTAC 2345930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009583522032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |