Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 2e-24
>seq3
Length=2773601
Score = 127 bits (140), Expect = 2e-24
Identities = 371/566 (66%), Gaps = 24/566 (4%)
Strand=Plus/Plus
Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198
|| |||| ||| || || || |||||| ||||| || |||| ||||| | ||| ||
Sbjct 791453 TTGAGCGCTTCAACATGGTCTGCGTAGACATGAGCATCGCCCATTGTGTGAATAAAATCA 791512
Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 27258
|| ||||| || || | ||| ||||| | ||| | | || || ||| ||
Sbjct 791513 CCACATTCTATTCCACAAACCTTAGCGATCATCTTCGTTAACAAAGCATAAGAGGCAATA 791572
Query 27259 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 27318
||||| || || || | ||||| || | || || || | |||||| || ||||||
Sbjct 791573 TTAAATGGCACTCCCAAGCCCATATCACAACTTCTTTGATATAACTGACAAGAAAGCTCT 791632
Query 27319 ------CCATC------GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCC 27366
|||| |||||| ||||||||| | | |||| || || |||||||||
Sbjct 791633 GGCTTACCATTACGGAAGCTTACATAAAACTGAGAAAATACGTGACAAGGTGGAAGAGCC 791692
Query 27367 ATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTG 27426
|| | || || ||| ||||| || ||| ||| || || ||||| | ||| |
Sbjct 791693 ATATCGTTCATATCGGCGGGATTCCATGCTGACATGATTATTCGTCTGTCATATGGTGTC 791752
Query 27427 TTCCTGATGAG--GTC-CACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTC 27482
| | |||| || ||| || ||| || ||||| || || | || ||||| ||
Sbjct 791753 TCCTTGATTTTTCGTATCAC----TTCTGCCAGTTGATCTACTCCTTTACCAGAGTAATC 791808
Query 27483 --TACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540
|| | || || || | || || ||||| ||||||||||| || ||||| |||
Sbjct 791809 AGTATCGCAAT--CCTCATATTTGGCGCCAAAATGTCTCCATTGGAAACCATACACGGGT 791866
Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 27600
|| || |||||||| ||||| || | || | |||||||||||| |||| ||
Sbjct 791867 CCAAGATCTCCCTCACGTCTGTGTTCTAGTCCTCGCTTGTCCAAAAACTCTCGACTTCCA 791926
Query 27601 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 27660
||| | ||||| || | || || | || || ||| ||| || | || |||||| ||
Sbjct 791927 TTGCCATCCCAAATATGAACGCCTCTGTCAGAAAGCAATTTCGAATCAGTAGACCCTTTG 791986
Query 27661 ACGAACCACAGCAGCTCCTCCACGAC 27686
|| ||||| | || || |||| |||
Sbjct 791987 ACAAACCATAATAGTTCTTCCAAGAC 792012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507181986524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |