Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 >seq3 Length=2773601 Score = 127 bits (140), Expect = 2e-24 Identities = 371/566 (66%), Gaps = 24/566 (4%) Strand=Plus/Plus Query 27139 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 27198 || |||| ||| || || || |||||| ||||| || |||| ||||| | ||| || Sbjct 791453 TTGAGCGCTTCAACATGGTCTGCGTAGACATGAGCATCGCCCATTGTGTGAATAAAATCA 791512 Query 27199 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 27258 || ||||| || || | ||| ||||| | ||| | | || || ||| || Sbjct 791513 CCACATTCTATTCCACAAACCTTAGCGATCATCTTCGTTAACAAAGCATAAGAGGCAATA 791572 Query 27259 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 27318 ||||| || || || | ||||| || | || || || | |||||| || |||||| Sbjct 791573 TTAAATGGCACTCCCAAGCCCATATCACAACTTCTTTGATATAACTGACAAGAAAGCTCT 791632 Query 27319 ------CCATC------GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCC 27366 |||| |||||| ||||||||| | | |||| || || ||||||||| Sbjct 791633 GGCTTACCATTACGGAAGCTTACATAAAACTGAGAAAATACGTGACAAGGTGGAAGAGCC 791692 Query 27367 ATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTG 27426 || | || || ||| ||||| || ||| ||| || || ||||| | ||| | Sbjct 791693 ATATCGTTCATATCGGCGGGATTCCATGCTGACATGATTATTCGTCTGTCATATGGTGTC 791752 Query 27427 TTCCTGATGAG--GTC-CACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTC 27482 | | |||| || ||| || ||| || ||||| || || | || ||||| || Sbjct 791753 TCCTTGATTTTTCGTATCAC----TTCTGCCAGTTGATCTACTCCTTTACCAGAGTAATC 791808 Query 27483 --TACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540 || | || || || | || || ||||| ||||||||||| || ||||| ||| Sbjct 791809 AGTATCGCAAT--CCTCATATTTGGCGCCAAAATGTCTCCATTGGAAACCATACACGGGT 791866 Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 27600 || || |||||||| ||||| || | || | |||||||||||| |||| || Sbjct 791867 CCAAGATCTCCCTCACGTCTGTGTTCTAGTCCTCGCTTGTCCAAAAACTCTCGACTTCCA 791926 Query 27601 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 27660 ||| | ||||| || | || || | || || ||| ||| || | || |||||| || Sbjct 791927 TTGCCATCCCAAATATGAACGCCTCTGTCAGAAAGCAATTTCGAATCAGTAGACCCTTTG 791986 Query 27661 ACGAACCACAGCAGCTCCTCCACGAC 27686 || ||||| | || || |||| ||| Sbjct 791987 ACAAACCATAATAGTTCTTCCAAGAC 792012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507181986524