Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 450 2e-121 >seq2 Length=4956242 Score = 450 bits (498), Expect = 2e-121 Identities = 1396/2135 (65%), Gaps = 48/2135 (2%) Strand=Plus/Minus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| || || ||||| |||| |||||||| || |||||| | |||||||| || || | Sbjct 3634435 CAACAGTAAATTGAATAGGAGCGGATGCTGCTTGTGTACGCAAGTAGTACATTCCTGTCT 3634376 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | |||||| ||| |||||||||||||| || || | |||| | | ||| | Sbjct 3634375 TAAGACCCTTTTGCCAGCCGTAGAAATGCATACTAGTCAATTTGCCCATAGTAGGAGCTT 3634316 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 || | ||| |||| || |||||||||||||| || || | | |||||| ||||| | Sbjct 3634315 GAATGTAAATGTTCAAAGATTGACTTTGATCGATAAAGGCAGCACGATCAGCAGCCATAT 3634256 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 || || ||||| |||| || ||||||| ||| || | | | |||||||| || | Sbjct 3634255 CAATGATTGTCTTCTGAGAAAGCTCCCAAACAGTCTTATACAATGCCTTGATATCCTCAG 3634196 Query 75612 GAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 | | || | |||| ||||| || || | | |||||| ||||||| || | | Sbjct 3634195 GGATGTTAGGAATATTCTGAATAGAACCATTGTTGGCAATAATTCTATTCTTCATGTTCT 3634136 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATT 75728 | ||||| | ||| | | | | | ||||||||||||| |||| Sbjct 3634135 CTCCCCACAGTCCCAAATCGACAAGGTCCTTCAACAACCATTGATTAACAATTTGGAATT 3634076 Query 75729 CTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 75788 | || | | ||||| |||| ||| || || || || ||||| | | |||| |||| Sbjct 3634075 CACCGGCAAGAACTCTACGAGAGTAGATGTTGGATGTGTAAGGTTCGAAACATTCGTTGT 3634016 Query 75789 TTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGA 75848 | || | |||||| | ||||| ||||| |||||||| || || | | ||||| | Sbjct 3634015 TACCAAGAATTTGTGATGTTGAGGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTTCTCA 3633956 Query 75849 GACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAA 75908 ||||||| | || || | || ||| ||| ||||| ||||| | || | Sbjct 3633955 GACCATGCTTAGCCATCTTCTTCTTGAGAGCAGCCCAGTCCCAGAGATCAGTGGGAGTGA 3633896 Query 75909 CATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGT 75968 |||||| | ||| |||| | || || || ||| || || | || || || | Sbjct 3633895 TATCCCACAAATCAAATTGCAAAAGACCCTTTGAGGCAGGAGAACCTTGGTAAGTCTCAT 3633836 Query 75969 AAGTCCCGTCCTTTTCAGCTAGTTCGCAACTC--GCCTCTAACGCACCGTAATAAATTGT 76026 | | |||| | ||| || ||||| ||| | || | ||| | | ||| || || Sbjct 3633835 AGGGTCCGTACAATTCGGCGAGTTC--AACCGAAGATTCAACAGCAGCATGATAGATGGT 3633778 Query 76027 TTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAA 76085 || ||| | || | | |||| || ||| | || || || || | | | Sbjct 3633777 CTCAGCAATTTGAACGTTCAATTGCTTG-GCCTCAGGGGAGTCGAATGGCAAACGGAGAG 3633719 Query 76086 GAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGG 76145 ||||| ||||| || | || |||| |||| | |||| ||||| || | |||| Sbjct 3633718 CCATAAAGGCATCGGCCAAACCTTGAATACCAAGAGCAATGGGTCTGTGACGGAAATTGC 3633659 Query 76146 AAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGA 76205 |||||||||| | ||||||| | || | || ||||| ||| | ||||| Sbjct 3633658 TTCTTTCAGCTTCCTTGACAGGGTAAAAGTTTCTGTCAATAATAACATTCAAGTTTCTAG 3633599 Query 76206 CAACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT-------CAAATTTTCC--ATCTA 76256 || || || | || || | |||||| ||| | |||| |||| ||| Sbjct 3633598 TGACAACCTTGGCAACCTCGTGAAGTTTGTTAAAGTTATACCACAAACCTTCCTCATCAC 3633539 Query 76257 TCACAAACATATTA---AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCAT 76313 | ||| | | | |||| | ||||| | |||||| ||||| || || | || | Sbjct 3633538 TTTCAACGAAAGCAGGTAGAGACAACGATGCCAAATTACAGACGGCAACTTCTTCAGGAG 3633479 Query 76314 TGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373 | || | | || || ||| | || |||||||||| || | ||||||| Sbjct 3633478 AAGAGTACTCAACAATTTCACAGCACAAGTTGGAGGACTTGATAGTACCCAAGTTTTGTT 3633419 Query 76374 GGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCT 76433 |||| ||||| | ||||| | ||||||||||| | || || | ||||| ||| | | Sbjct 3633418 GGTTACTCTTGCTATTACAAGCATCCTTATAAAGCATGAATGGGTTACCAGTCTCAGTTT 3633359 Query 76434 GTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCG--CTT 76491 | | ||||| ||||| | ||| | | || || || | | || || ||| Sbjct 3633358 GAGCTTCGAGAATAGCATACCACAGCTTTTGGGCCTTGATGGTTCTTCTGCCTCTACCTT 3633299 Query 76492 C--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 | |||| | | | | | | | | || || || || || | ||||||||||| Sbjct 3633298 CCTTCTCGTACTTCTCATAAAGAGCAACG----AACTCGTCACCATAGACATCATCCAAG 3633243 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 |||||||| ||||| ||||||||||| | ||| || | | |||| || | ||||| Sbjct 3633242 CCAGGACACTCATTGGGACACATCAAAGTCCAATCCTCGTTAGCCTTGACTCTCTTCATG 3633183 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || | ||||| ||||||||||| | || | ||||| || | |||||| || || Sbjct 3633182 AACAAGTCAGGAATCCATAGAGCCAAGAACAAATCTCTGGCACGGACTTCTTCCTTACCG 3633123 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 ||||||| || || | ||| || | || |||| |||||| || || | || || Sbjct 3633122 TGATTCTTTCGCAGCTCAATGAATTCAAAAACATCATCATGCCAAGGCTCCAAGTACATG 3633063 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | |||| ||||| |||||||| |||||||| | |||||| ||||| ||||| || Sbjct 3633062 GCAAAAGCACCTGGTCGCTTATTACCACCCTGATCAACATATCTAGCAGTATTATTGAAA 3633003 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 ||||||||||| |||| ||| ||||| || ||||| || ||||||| ||| || ||| Sbjct 3633002 ACTCTCAACATGGGAACAATACCGTTTGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCA 3632943 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 ||||| |||||| || | | || || || || || || || || | ||| Sbjct 3632942 GTAGCACGGATATTATGAACACTCAAACCAATACCACCAGCAGACTTTGAAATCAAGGCA 3632883 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAA-GAAGAA- 76967 || ||||| || || || ||||| |||||| ||| ||| ||||||||| ||||| Sbjct 3632882 CAAGTCTTCAAAGTATCGTAAATGCCATCTATAGAATCGTCCTTCATGTTAACCAAGAAG 3632823 Query 76968 -AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGA 77026 || || ||||||||| | | ||| || ||||| ||| || || || ||||| Sbjct 3632822 CAAGAG---GACATTTGAGGCTTGGGAGTACCAGCATTGTACAGAGTGGGGGAGGCATGT 3632766 Query 77027 GTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTT--CTATATCCCAT 77083 || || | |||| ||| | |||| |||||||||||||| | ||| ||||| | Sbjct 3632765 GTAAAATACTTTTGAGACATGTAG-TTGTATGTTTCAATGGC--CTTGGTGATATCAGAA 3632709 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143 |||||| || ||||| || | ||| | ||| || || |||| || | | ||| | Sbjct 3632708 CCATGAATACCAACAGCTACTCTCATGATCATGTGTTGGGGTCTCTCGGCGATTTTACCA 3632649 Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203 || || || | |||||| ||| |||||||||| || ||||| || || ||||| || || Sbjct 3632648 TTAATCTTGAGCAAGTACGATCTTTCCAAAGTCTTGAAACCGAAGTAATTGTAAGAGAAA 3632589 Query 77204 TCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATG 77263 || | || |||| ||| | ||||| || | || || || ||||| | ||| Sbjct 3632588 TCACGATCATAAACAATGGCTGAATTAAGCTCATCAGCATGCTTTTGAACAACCT-CAT- 3632531 Query 77264 ACA-GTGGT-AGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATA 77321 ||| || | || ||| || || || | | ||||| |||||| ||||| ||| Sbjct 3632530 ACACGTCATCAGCAATCATGGGCGAAAGCTTACCATTGCGAGGATTGGTATAGTGGTATA 3632471 Query 77322 AGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTA 77381 | || | || || | ||| | || || |||| || || | || || || || | Sbjct 3632470 AATCGTAGATGACCTGAGAGAATTGCTTCTTGGTTTGTTTATGCAAGTTAGAAACAGCGA 3632411 Query 77382 TTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGT-GGCTGCTATTTCT 77440 |||||||||| ||||||||||| || || ||||| || || || | ||| || | || Sbjct 3632410 TTCTAGCAGCAAGAATTGCATAATCTGGGTGTTGAGTGGT-CATATAGGCAGCGGTCTCA 3632352 Query 77441 GCCGCTAAAGTATCTAATTCTATAGTAGTAACTCC 77475 || || ||| | || ||||| | ||| || ||||| Sbjct 3632351 GCAGCCAAATTGTCCAATTCAACAGTCGTGACTCC 3632317 Score = 242 bits (268), Expect = 5e-59 Identities = 429/622 (69%), Gaps = 10/622 (2%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| |||||||| || | ||||||||| | || |||||||| || || || Sbjct 3220022 AAACAAGCAAAATCGGTGTGCATGCCTTCATCACGCGAGATCAATTCGTTTGAGAACGTC 3219963 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || |||||||| ||||||||||| || | ||| || ||| || || |||||||| ||| Sbjct 3219962 AGACCAGGCATGAGTCCACGCTTCTTCAACCAGAAGATACTGGCAAATGATCCAGAGAAG 3219903 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG---CATCATTA 46803 || || || || || || || || || || || | ||| | || ||| ||||| | Sbjct 3219902 AAGATACCCTCAACGGCAGCAAAGGCAACGAGACGCTCAGCAAAAGTGGACTGATCATCA 3219843 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 |||||| | ||||||| |||||||| ||||| | ||| || || | || |||||| Sbjct 3219842 GCAATCCATCGGAGAGCCCAGTCAGCCTTCTTCTTAATACATGGAATATTGTCAATAGCA 3219783 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTAT 46921 | || | |||||| || | | ||| || | ||| || || || | || || | Sbjct 3219782 TGGAACAAAAAGTTAGCCTCCTTAGCATCCTTGATATAAGTGTCAATAAGTAATGA--GT 3219725 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 | | |||| ||| ||||| || || || || || ||||||||||| |||| || | Sbjct 3219724 AGGTCTCTGCATGGATGTTCTCCATCATAATTTGGAAACCGTAAAAACACTTTGCCTCGG 3219665 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 ||| || || || | | |||| |||| ||| ||||| || || || ||||| || Sbjct 3219664 GAATTTGAACTTCACCAGAGAATCTTTCAACCAAGTTCTCGTTGACGATACCATCTGAAG 3219605 Query 47042 CAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTAT 47098 ||||||| ||||| | ||| | |||||| || | ||||| | | | | | | Sbjct 3219604 CAGCAAAGAATGCAAGGACACGAGAGATAAAAAATCTCTCATCATCATTAAGACGGTGCT 3219545 Query 47099 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTG 47158 ||||||| |||| || ||| || ||| | ||||||||| |||||||| || ||||| | Sbjct 3219544 CCCAGTCACTGATGTCCTTTCCTAAATCAATTTCTTCAGCAGTCCAGAAAGAAGCCTCAG 3219485 Query 47159 CTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTG 47218 | | || ||||| | ||| || ||| | || | || || || | ||||||||| || | Sbjct 3219484 CCTGCTTGTACATTTGCCAAATCTCATGGTACTTAATAGGGAACAGAACAAATCTGTTAG 3219425 Query 47219 GATTTTTTGCAAGTATAGGTTC 47240 | |||| | ||| | |||||| Sbjct 3219424 GGTTTTCTTGAAGGAGAGGTTC 3219403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934364353280