Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3 123 6e-23 seq2 102 2e-16 >seq3 Length=2773601 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || ||||| ||||||||||| | || ||||| |||||||||| Sbjct 154327 CAAG-TGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGCCATCTTCTA 154269 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || ||||| || || ||||| | | || |||||||| ||||||| Sbjct 154268 ATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAA 154209 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | | || || ||| |||||||||||||| || || | Sbjct 154208 TTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTTAC 154149 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||||| ||||| Sbjct 154148 CAGTGAGGGTCTTTACGAAGATTTGCAT 154121 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || ||||| || |||||||| | || ||||| |||||||||| Sbjct 154099 CAAG-TGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGCCATCTTCTA 154041 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || ||||| || || ||||| | | || |||||||| ||||||| Sbjct 154040 ATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAA 153981 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | || || ||| || |||||||| || || || | Sbjct 153980 TCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTAC 153921 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | ||||| ||||| ||||||| |||||| Sbjct 153920 CAGTGAGGGTCTTTACGAAGATTTGCATT 153892 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || ||||| || ||||||||||| |||| | ||| | || || Sbjct 155245 GAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTC 155186 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||| ||||| || || || ||||| | | || || ||||| || Sbjct 155185 TTCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTC 155126 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | |||| ||| ||| || || || || ||||| Sbjct 155125 TTGGATCTTGGTCTTGACATTATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGT 155066 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||| ||||| Sbjct 155065 CTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 155033 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || ||||| ||||| ||||| |||||||| || | | ||||| ||||| Sbjct 1977684 GAGGACAAGGTGGAGAGTCGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATC 1977625 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || |||||||||||||| | || || || | | ||||| ||||| || Sbjct 1977624 CTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCCTCCTTGTC 1977565 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || ||||| | || | | |||| ||| ||| || || || || || || Sbjct 1977564 TTGGATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGT 1977505 Query 152072 TTTGCCCGTGAGAGTCTTCACGAA 152095 || || || || ||||| ||||| Sbjct 1977504 CTTACCAGTAAGGGTCTTGACGAA 1977481 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || |||||||| || ||||||||||| || |||| | ||| | || || Sbjct 155017 GAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTC 154958 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | || || ||||| || | | ||| ||||| | | || |||||||| || Sbjct 154957 TTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC 154898 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || ||||| | || | | || || ||| ||||| ||||||||||| Sbjct 154897 TTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGT 154838 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| ||||||| ||||| Sbjct 154837 CTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || ||||| || || ||||| |||||||| |||| | ||| | Sbjct 154795 GAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACG 154736 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || ||||| || | | ||| ||||| | | || || || Sbjct 154735 GCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTC 154676 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||||| | || | | || || || ||||| ||||| Sbjct 154675 CTTGTCTTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGT 154616 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| || || || | |||||| ||||||| ||||| Sbjct 154615 AATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||| || ||||| |||||||| |||| | ||| | Sbjct 154567 GAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTACG 154508 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || |||||||| || || ||||| | | || || || Sbjct 154507 ACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATACCCTC 154448 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || || ||| | || | | || || ||| ||||| || || Sbjct 154447 CTTGTCTTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGACTTCGAGGGT 154388 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || | ||||| || |||| ||||| Sbjct 154387 GATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349 >seq2 Length=4956242 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || ||||||||||| |||||||||||||| || | | || | Sbjct 2345908 GAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACG 2345967 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| | | || || || | | ||||| || Sbjct 2345968 ACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTC 2346027 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || |||||| | || | |||| ||| ||| || ||||| || Sbjct 2346028 CTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCAAGGGT 2346087 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || ||||| ||||| | ||||| Sbjct 2346088 GATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820740866684