Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3 196 1e-44
seq2 188 1e-42
>seq3
Length=2773601
Score = 196 bits (216), Expect = 1e-44
Identities = 180/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || | || | ||| ||| ||||| ||||||||||| |
Sbjct 154804 ACCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGA 154745
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| ||||| || || || || |||||||| |||||||| ||
Sbjct 154744 GAGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGG 154685
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||||||| ||||| | || ||| |||| ||||| || || | ||| ||
Sbjct 154684 AATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAAC 154625
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||| || |||||||| ||||||||||| ||||| || |||||
Sbjct 154624 TTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | || ||| ||||||||||| ||||| |
Sbjct 155032 ACCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGA 154973
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| || || | ||| || || || || |||||||| |||||||| ||
Sbjct 154972 GAGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGG 154913
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||| ||||||||||| ||||| | || ||| | |||||||| || || | |||||
Sbjct 154912 AATACCTTCCTTGTCTTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGAC 154853
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||| || |||||||| ||||||||||| ||||| || |||||
Sbjct 154852 TTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || | || | || ||| ||||| ||||||||||| |
Sbjct 154576 ACCACCACGGAGACGGAGAACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGA 154517
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || |||||||| ||||| || || |||||||| | | ||||||||| ||
Sbjct 154516 AAGAGTACGACCATCCTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGG 154457
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||||||||||||| | || || |||| ||||| || || | |||||
Sbjct 154456 AATACCCTCCTTGTCTTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGGACTCGAC 154397
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||||| ||||| ||||| || ||||| ||||| || || || |||||
Sbjct 154396 TTCGAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 154349
Score = 161 bits (178), Expect = 2e-34
Identities = 145/182 (80%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| ||||||||||||| ||| || | ||||||||| ||||| || ||||| |||
Sbjct 1977662 TCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTGCCATCCTCGAGTTGCTTACCGGCGAAG 1977603
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | ||||||||| || ||||| |||||||||||||||||||| | || ||| |
Sbjct 1977602 ATAAGACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTG 1977543
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| || ||||| |||| ||||| ||||| ||||| |||||||| || | ||||| |||
Sbjct 1977542 TCAATGGTGTCGGAAGACTCGACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACG 1977483
Query 283089 AA 283090
||
Sbjct 1977482 AA 1977481
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || |||| || | || || || |||||||||||||| |
Sbjct 155260 ACCGCCACGAAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 155201
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || || || || || || ||||||||||| | | ||||||||| ||
Sbjct 155200 GAGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGG 155141
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||||||||| | || || |||| || |||||||||| |||||
Sbjct 155140 AATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATGGTGTCCGAAGACTCGAC 155081
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| |||||||| || | ||||| ||||| || |||||
Sbjct 155080 CTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 155033
Score = 149 bits (164), Expect = 1e-30
Identities = 172/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| || ||||| |||| || | ||| ||| ||||| |||||||| ||||
Sbjct 154348 ACCACCACGAAGACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 154289
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || | |||||| |||| ||| || || ||||| || | | ||||||||| |
Sbjct 154288 CAAG-GTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAG 154230
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||| ||||||||||| || || | || || |||| ||||| || || | || |
Sbjct 154229 GAATACCTTCCTTGTCTTGAATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAA 154170
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| ||||| || |||||||| || | ||||| ||||| || |||||
Sbjct 154169 CTTCAAGAGTAATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
Score = 147 bits (162), Expect = 5e-30
Identities = 172/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| || ||||| |||| || | || ||| ||||| || ||||| ||||
Sbjct 154120 ACCACCACGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGA 154061
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || | |||||| |||| ||| || || ||||| || | | ||||||||| |
Sbjct 154060 CAAG-GTTCTGCCATCTTCTAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAG 154002
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||| ||||||||||| ||||| | || || | |||||||| || || | || |
Sbjct 154001 GAATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATAGTATCAGAGGACTCAA 153942
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
| || |||||||| |||||||| || | ||||| ||||| || ||||||
Sbjct 153941 CCTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTACGAAGATTTGCATT 153892
>seq2
Length=4956242
Score = 188 bits (208), Expect = 1e-42
Identities = 185/239 (77%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || || || | || || |||||||||||||||||||
Sbjct 2345899 ACCACCACGGAGACGGAGGACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 2345958
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || |||||||| ||||| || || |||||||||||||||||||| || ||
Sbjct 2345959 AAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGG 2346018
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||||||||| | || || | ||||||||||| |||| || ||
Sbjct 2346019 AATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGACTCAAC 2346078
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACA 283110
|| || ||||| |||||||| || | ||||| ||||| || ||||| | | |||||
Sbjct 2346079 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACGAAAATTTGCATCGTTAAATACA 2346137
Score = 100 bits (110), Expect = 6e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 316981 CCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAAT-ATCCTTCGTCGGGAACCCTTC 317039
|| |||| || ||||| || || |||| || | | | ||| | || ||||| || ||
Sbjct 530612 CCATCGATATCGTGCTCGACGTAGACAGTCTT-ACACTCATCTTGAGTAGGGAAACCCTC 530670
Query 317040 CAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCA 317099
| |||||||| |||| || ||||| || || ||||| |||||||| || || || ||
Sbjct 530671 GACTTGACCGTTGGCAATAGCTCTCATAAGAGTAGACTTACCAGCACCGTTAGGACCACA 530730
Query 317100 AAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACC 317159
|||||||| ||| | ||| ||| | |||| ||| || | ||||| |
Sbjct 530731 GAGACCATAACGACGGGCACGCTTAAGACGGAGTTGGGTACGGTTAAGCAAGATCTTGGC 530790
Query 317160 ACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201
|||||| || |||||||||||||| | ||||| |||||| ||
Sbjct 530791 ACCATAAGCAAGAGAGAACTCACAGTTACACAAGTCCTCACC 530832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046739146354616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |