Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016-
05-06] 4 sequences; 15,938,258 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq3 116 3e-21
seq2 109 4e-19
>seq3
Length=2773601
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || || |||||| ||||||||||| |||| ||| || |||| ||
Sbjct 155241 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCG 155182
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||| | | || || |||| || | || ||||| ||
Sbjct 155181 AGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 155122
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||| | || || ||||| | ||| || |||||
Sbjct 155121 ATCTTGGTCTTGACATTATCAATGGTGTCCGAAGACTCGACCTCGAGCGTGATAGTCTTA 155062
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| ||||||||||||||
Sbjct 155061 CCAGTGAGGGTCTTGACGAAGATTTGCAT 155033
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || || |||||||||||||| || |||| ||| || |||| |||
Sbjct 155013 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAGAGAGTACGGCCGTCTTCC 154954
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
| ||||| || || || ||||||||||| || |||| ||| | ||||||||| ||
Sbjct 154953 AATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 154894
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || || || | ||| || || || | ||||| |||||
Sbjct 154893 ATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGACTTCGAGAGTAATAGTCTTA 154834
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||| ||||||||||||||
Sbjct 154833 CCAGTCAAAGTCTTGACGAAGATTTGCAT 154805
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 44134 GTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193
||| || ||| |||||||| |||||||| |||| ||| || | || || || ||
Sbjct 154780 GTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCATCCTCGAGTTG 154721
Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253
||| || || || ||||||||||| || |||| ||| | ||| ||||| || |||||
Sbjct 154720 CTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTT 154661
Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313
||| | | | || || || | |||||| || || | ||||| ||||| || ||
Sbjct 154660 GGTCTTGACGTTATCAATAGTATCAGAGGATTCAACTTCGAGAGTAATAGTCTTACCAGT 154601
Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337
| ||||| ||||||||||||||
Sbjct 154600 CAAAGTCTTGACGAAGATTTGCAT 154577
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/220 (71%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|||| |||||| || |||||||| || |||||||| | | || | || | || ||
Sbjct 154101 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCAGACAAGGTTCTGC-CATCTTC 154043
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
| ||||| || ||||| || | | || || |||| ||| | ||||||||| ||
Sbjct 154042 TAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 153983
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | || || || | ||| || ||||| | || || |||
Sbjct 153982 AATCTTGGTCTTGACATTGT--CGATAGTATCAGAGGACTCAACCTCAAGAGTGATGGTC 153925
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAA 44345
|| || ||||||||||| |||||||||||||| ||||||
Sbjct 153924 TTACCAGTGAGGGTCTTTACGAAGATTTGCAT--TGTGAA 153887
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|||| ||| || ||| |||||||| ||||||||||| | | || | || | || ||
Sbjct 154329 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGACAAGGTTCTGC-CATCTTC 154271
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
| ||||| || ||||| || | | || || |||| ||| | ||||||||| ||
Sbjct 154270 TAATTGCTTACCAGCAAAAATAAGTCTTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 154211
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| || ||| | | | || || || | ||| || || || | ||||| |||||
Sbjct 154210 AATTTTGGTCTTAACATTATCAATAGTATCAGAGGACTCAACTTCAAGAGTAATGGTCTT 154151
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| ||||||||||||||
Sbjct 154150 ACCAGTGAGGGTCTTTACGAAGATTTGCAT 154121
>seq2
Length=4956242
Score = 109 bits (120), Expect = 4e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||||||||||||||| || | || || | || ||
Sbjct 2345918 ACAAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGACCATCCTCA 2345977
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||||||||| || ||||||| || | || ||||| ||
Sbjct 2345978 AGTTGCTTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGG 2346037
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | || ||||||| || || ||||| | || || ||||
Sbjct 2346038 ATCTTGGTCTTGACATTGT--CGATAGTGTCGGAAGACTCAACCTCAAGGGTGATAGTCT 2346095
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || |||||||| ||||| ||||||||
Sbjct 2346096 TACCGGTAAGGGTCTTGACGAAAATTTGCAT 2346126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990382450468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |