Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 141 2e-28 seq2 120 7e-22 >seq3 Length=2773601 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || |||||||||||||| || || |||||||| Sbjct 1977480 TTTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCAT 1977539 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || |||||||| ||||| || ||||| || ||||| || || || || ||||| || Sbjct 1977540 TGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAACGTCT 1977599 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||||||| || || ||||| ||||| || || ||| | || || ||| | ||||| Sbjct 1977600 TATCTTCGCCGGTAAGCAACTCGAGGATGGCAGAACCCTTTCTGACTACAACATTCAAAA 1977659 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || || || ||||| Sbjct 1977660 GGAGTCGACTCTCCACCTTGT 1977680 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| |||||||| || || ||| Sbjct 155036 CAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACGCTCGAGGTCGAGTCTTCGGAC 155095 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||| || || || || || ||||| ||| Sbjct 155096 ACCATTGATAATGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAA 155155 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| ||||| || ||||||||||| || | ||||| |||| || ||| || Sbjct 155156 AGACTCATCTTTGCCGGTAAGCAGCTCGAAGACGGTCGTACTCTCTCCGACTACAACATC 155215 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 155216 CAGAAGGAGTCGACCCTCCA-CTTG 155239 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || ||||| || ||||||||||| || || ||| || Sbjct 154352 CAAATCTTTGTCAAGACCTTGACTGGAAAGACCATCACCCTCGAAGTCGAGTCCTCTGAT 154411 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || ||||| || || || ||||| ||||| ||| Sbjct 154412 ACTATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAACAA 154471 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| || || || || ||||| ||||| | |||||| |||| || ||| | Sbjct 154472 AGACTTATCTTTGCTGGTAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAACATT 154531 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||| ||||| || || || Sbjct 154532 CAAAAGGAATCTACTCTTCA 154551 >seq2 Length=4956242 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || |||||||| ||||| || || ||| Sbjct 2346123 CAAATTTTCGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTTGAGTCTTCCGAC 2346064 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| || ||||| || ||||| || || || || ||| Sbjct 2346063 ACTATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAACAA 2346004 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || || ||||| | || ||| | || || ||| || Sbjct 2346003 CGTTTGATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACAACATC 2345944 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || ||||| Sbjct 2345943 CAAAAGGAGTCTACTCTCCACCTTGT 2345918 Score = 96.9 bits (106), Expect = 8e-15 Identities = 194/287 (68%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATT 214182 || ||||||| ||||| || |||| | ||||| || || ||||| || | Sbjct 3633431 CCCAAGTTTTGTTGGTTACTCTTGCTATTACAAGCATCCTTATAAAGCATGAATGGGTTA 3633372 Query 214183 CCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTT 214242 || ||| |||||| | ||||| || ||| || | ||||||||| | | || Sbjct 3633371 CCAGTCTCAGTTTGAGCTTCGAGAATAGCATACCACAGCTTTTGGGCCTTGATGGTTCTT 3633312 Query 214243 TTGGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACA 214302 || |||| || || || |||||||| |||||||||| | || || ||| |||||| Sbjct 3633311 CTGCCTCTACCTTCCTTCTCGTACTTCTCATAAAGAGCAACGAACTCGTCACCATAGACA 3633252 Query 214303 TCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACT 214362 ||||| | || ||| ||| ||||| || | | | |||| | | ||| || ||||| Sbjct 3633251 TCATCCAAGCCAGGACACTCATTGGGACACATCAAAGTCCAATCCTCGTTAGCCTTGACT 3633192 Query 214363 CTTTTCATGAAAAGGTCGGAAGTCCAGATTGC--ATAAAAAATCTCT 214407 || |||||||| | ||| | | |||| | || | || |||||||| Sbjct 3633191 CTCTTCATGAACAAGTCAGGAATCCATAGAGCCAAGAACAAATCTCT 3633145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731138308776