Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20lignohabitans_20[refseq_20GCF_5F001640025.1_202016- 05-06] 4 sequences; 15,938,258 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 125 7e-24 >seq3 Length=2773601 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||| || || || ||||||||| ||||| ||||||||| Sbjct 155259 CCGCCACGAAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 155200 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| ||||| || || || | |||||||| | |||| Sbjct 155199 AGAGTACGACCGTCTTCGAGCTGCTTACCGGCAAAGATGAGTCTTTGTTGGTCTGGGGGA 155140 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| | | | | | ||||| ||||| || Sbjct 155139 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTATCA-ATGGTGTCCGAAGACTCGAC 155081 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || ||||| || || ||||| ||||| || ||||| Sbjct 155080 CTCGAGCGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 155033 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || | || || ||| ||||| |||||||| ||||||||| Sbjct 154803 CCACCACGGAGACGGAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 154744 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||| ||||| || ||||| |||| ||||||||||| | ||| Sbjct 154743 AGAGTACGGCCATCCTCGAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGA 154684 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | || | | ||| | | ||| || || || || Sbjct 154683 ATACCCTCCTTGT-CTTGAATCTTGGTCTTGACGTTATCAATAGTATCAGAGGATTCAAC 154625 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || ||||| |||| ||||| ||||| || ||||| Sbjct 154624 TTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154577 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||| || ||||||||||||||| Sbjct 155031 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTATAGTCGGAG 154972 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||| || ||||| |||| ||||||||||| | ||| Sbjct 154971 AGAGTACGGCCGTCTTCCAATTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGA 154912 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| | || | | ||| | | | ||| || ||||| || Sbjct 154911 ATACCTTCCTTGT-CTTGAATCTTAGTCTTGACGTTGTCGATAGTATCAGAGGACTCGAC 154853 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || ||||| |||| ||||| ||||| || ||||| Sbjct 154852 TTCGAGAGTAATAGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 154805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303976884800