Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq87 109 4e-19
>seq87
Length=222757
Score = 109 bits (120), Expect = 4e-19
Identities = 479/750 (64%), Gaps = 26/750 (3%)
Strand=Plus/Minus
Query 18618 CCTCTTTTAACTACAAAGCGTGTTT--TTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGT 18675
||||| |||||||| || | |||| ||| ||| ||| | |||||| |||||||||
Sbjct 41047 CCTCTATTAACTACGAAAAGAGTTTACTTTAAAGGT--GTCTTAGAAGAGCTGTTATGGT 40990
Query 18676 TTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATA 18735
|| | || || |||||||||||| |||| | | || || | ||||||||||||
Sbjct 40989 TTGTAAAGGGCTCTACCGATTCCAAATTACTCTCGGATAGAGGCGTTCACATATGGGATG 40930
Query 18736 TATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGACC 18795
| | ||| || | |||||| ||| || | || | |||| | || || |
Sbjct 40929 GAAATGGAAGCAGAGAGTTTCTAGATAAACGAGGACTACAGCATAGACGCGAAGGAGATC 40870
Query 18796 TTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT 18855
| || || | || || || || ||| | |||||||| || ||||| |||||||| |
Sbjct 40869 TAGGACCTGTCTATGGATTTCAATGGCGTCATTTTGGTGCCAAATATGAAGACTGTGATA 40810
Query 18856 CAAACTATTTACAGCAA--GGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAAC 18913
|| | || ||| | || ||| | ||||||||| | ||| || | ||| |||
Sbjct 40809 CAGATTA--TACTGGAAAGGGAGTGGATCAGCTGGCAGATGTGATTCGAAAAATCAAAGA 40752
Query 18914 AAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAAT 18973
| ||| | ||| | || || || ||| | ||||| || ||||| ||
Sbjct 40751 GACTCCATATGATCGAAGGATTATCATGTCGGCATGGAACCCTGCCGATATGAATGATAT 40692
Query 18974 GGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTT-GC-----AAACGG------ 19021
|| ||||| || ||||| || | ||||||||| ||| || || ||
Sbjct 40691 GGCTCTACCACCCTGTCATGTATTCTCTCAGTTTTATGTTAGCTTTCGTAATGGCAGAAA 40632
Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081
|| | ||||||||| | ||||| ||| | || |||||| | || || || |||||
Sbjct 40631 AGAGCTCTCCTGCCAACTGTACCAAAGAAGTTGTGACATGGGCTTGGGTGTCCCCTTCAA 40572
Query 19082 CATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGG 19141
|| ||| || || | || || | || | || || || ||| | | ||
Sbjct 40571 TATCGCTTCCTACGCGTTGCTAACAAAGATGATCGCTCAAGTATGTGGAATAGAGTGTGG 40512
Query 19142 AGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAA 19201
||||| || ||||||||||| ||||| || | || | ||| | || || | |
Sbjct 40511 CGATTTCATCCATACAATGGGAGATGCTCACGTCTATGCTGACCATGTTGACGCACTTAG 40452
Query 19202 AGTGCAGCTAGCTCGATC-CCCAAAACCTTTTCCTTGCCTTAAAATTATTC--GAAATGT 19258
||| || | || ||| | || | || |||| || ||| | || | | || ||||
Sbjct 40451 AGTCCAAATCGCACGAACACCTACAAACTTTCCC---ACTTTACGTTTTGCAAGAGATGT 40395
Query 19259 AACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccc 19318
||||||||| |||| |||| || || |||||| |||| ||||| || || || |
Sbjct 40394 AACAGATATTGACGATTTTAGATATGAAGATTTTATTGTTGAAGGATACAAGCCGCAATC 40335
Query 19319 cccccTAAAAATGGAAATGGCTCTTTAATG 19348
| | | ||| ||||| || |||||||
Sbjct 40334 CAAGATCGAGATGAAAATGTCTGTTTAATG 40305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399503191753470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |