Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq87 109 4e-19 >seq87 Length=222757 Score = 109 bits (120), Expect = 4e-19 Identities = 479/750 (64%), Gaps = 26/750 (3%) Strand=Plus/Minus Query 18618 CCTCTTTTAACTACAAAGCGTGTTT--TTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGT 18675 ||||| |||||||| || | |||| ||| ||| ||| | |||||| ||||||||| Sbjct 41047 CCTCTATTAACTACGAAAAGAGTTTACTTTAAAGGT--GTCTTAGAAGAGCTGTTATGGT 40990 Query 18676 TTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATA 18735 || | || || |||||||||||| |||| | | || || | |||||||||||| Sbjct 40989 TTGTAAAGGGCTCTACCGATTCCAAATTACTCTCGGATAGAGGCGTTCACATATGGGATG 40930 Query 18736 TATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGACC 18795 | | ||| || | |||||| ||| || | || | |||| | || || | Sbjct 40929 GAAATGGAAGCAGAGAGTTTCTAGATAAACGAGGACTACAGCATAGACGCGAAGGAGATC 40870 Query 18796 TTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT 18855 | || || | || || || || ||| | |||||||| || ||||| |||||||| | Sbjct 40869 TAGGACCTGTCTATGGATTTCAATGGCGTCATTTTGGTGCCAAATATGAAGACTGTGATA 40810 Query 18856 CAAACTATTTACAGCAA--GGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAAC 18913 || | || ||| | || ||| | ||||||||| | ||| || | ||| ||| Sbjct 40809 CAGATTA--TACTGGAAAGGGAGTGGATCAGCTGGCAGATGTGATTCGAAAAATCAAAGA 40752 Query 18914 AAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAAT 18973 | ||| | ||| | || || || ||| | ||||| || ||||| || Sbjct 40751 GACTCCATATGATCGAAGGATTATCATGTCGGCATGGAACCCTGCCGATATGAATGATAT 40692 Query 18974 GGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTT-GC-----AAACGG------ 19021 || ||||| || ||||| || | ||||||||| ||| || || || Sbjct 40691 GGCTCTACCACCCTGTCATGTATTCTCTCAGTTTTATGTTAGCTTTCGTAATGGCAGAAA 40632 Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081 || | ||||||||| | ||||| ||| | || |||||| | || || || ||||| Sbjct 40631 AGAGCTCTCCTGCCAACTGTACCAAAGAAGTTGTGACATGGGCTTGGGTGTCCCCTTCAA 40572 Query 19082 CATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGG 19141 || ||| || || | || || | || | || || || ||| | | || Sbjct 40571 TATCGCTTCCTACGCGTTGCTAACAAAGATGATCGCTCAAGTATGTGGAATAGAGTGTGG 40512 Query 19142 AGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAA 19201 ||||| || ||||||||||| ||||| || | || | ||| | || || | | Sbjct 40511 CGATTTCATCCATACAATGGGAGATGCTCACGTCTATGCTGACCATGTTGACGCACTTAG 40452 Query 19202 AGTGCAGCTAGCTCGATC-CCCAAAACCTTTTCCTTGCCTTAAAATTATTC--GAAATGT 19258 ||| || | || ||| | || | || |||| || ||| | || | | || |||| Sbjct 40451 AGTCCAAATCGCACGAACACCTACAAACTTTCCC---ACTTTACGTTTTGCAAGAGATGT 40395 Query 19259 AACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccc 19318 ||||||||| |||| |||| || || |||||| |||| ||||| || || || | Sbjct 40394 AACAGATATTGACGATTTTAGATATGAAGATTTTATTGTTGAAGGATACAAGCCGCAATC 40335 Query 19319 cccccTAAAAATGGAAATGGCTCTTTAATG 19348 | | | ||| ||||| || ||||||| Sbjct 40334 CAAGATCGAGATGAAAATGTCTGTTTAATG 40305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399503191753470