Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq32 131 2e-25
seq111 91.5 2e-13
seq90 89.7 5e-13
>seq32
Length=396137
Score = 131 bits (144), Expect = 2e-25
Identities = 153/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || ||||| ||||||||| |||| ||||| | |
Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || || | ||||| |||||||| ||| | |||||
Sbjct 380689 GACACCATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 380631
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||||| || |||| ||| || || ||| |||| |||| | |||||| ||||||||
Sbjct 380630 ACAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACAA 380571
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| |||| || ||
Sbjct 380570 CATCCAGAAGGAGTCCACCCTCCA 380547
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || ||||||||| | || ||||| | ||
Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || || | ||||| |||||||| ||| | |||||
Sbjct 380917 GACACCATCGACAACGTT-AAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 380859
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || | || | ||| || || || || || || | | ||||| |||||||||
Sbjct 380858 ACAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAA 380799
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||| |||||| |||| || || ||||
Sbjct 380798 CATCCAAAAGGAGTCCACTCTCCACTTAGT 380769
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | || ||||| || || ||| | || |||||| | |
Sbjct 381661 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTCGAATCTTCT 381602
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | ||||| || || | ||||| ||||| || ||| | |||||
Sbjct 381601 GATACTATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381542
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||| ||||||||| || ||||| || || || || | || || ||| |||||||||
Sbjct 381541 CAAAGACTCATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACTCTCTCTGACTACAAC 381482
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||| |||||| | || || || || ||
Sbjct 381481 ATCCAAAAGGAGTCTACTCTTCACCTCGT 381453
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| |||||||| || || || || || |||||||| | || ||||| | |
Sbjct 381890 AATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTC 381831
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | | |||| ||||| || |||| ||||| || || || || | ||||
Sbjct 381830 TGACACCATCGACAACG-TCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACC 381772
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
| || || | || | ||| || || || ||||| |||| || || || || ||||
Sbjct 381771 AACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTACA 381712
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
||||||| || || |||| || ||
Sbjct 381711 ACATCCAAAAAGAATCCACTCTCCA 381687
>seq111
Length=751517
Score = 91.5 bits (100), Expect = 2e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || || || || ||||||||| |||| ||||| | |||||| | |
Sbjct 299039 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 299098
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| || || || ||| | || || ||||| ||
Sbjct 299099 GACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTT 299158
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || || || || || | | ||||| |||||||||||||| |||
Sbjct 299159 ATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAAG 299218
Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| | || || || || || | || ||||| || ||
Sbjct 299219 GAGTCTACTCTTCACCTTGTCCTCCGTTTGAGAGGTGG 299256
>seq90
Length=207308
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || ||||||||| |||| || || | ||
Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||| || ||| | || ||
Sbjct 159229 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 159170
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| || || || || || || |||| || || || || ||||||
Sbjct 159169 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACAAC 159110
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||| |||||| | || || || || ||
Sbjct 159109 ATCCAAAAGGAGTCTACTCTCCACCTTGT 159081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218130920160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |