Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq32 131 2e-25 seq111 91.5 2e-13 seq90 89.7 5e-13 >seq32 Length=396137 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| ||||||||| |||| ||||| | | Sbjct 380749 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 380690 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||| ||| | ||||| Sbjct 380689 GACACCATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 380631 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||| || || ||| |||| |||| | |||||| |||||||| Sbjct 380630 ACAACGTCTTATCTTCGCTGGTAAGCAGTTGGAAGACGGCAGAACCCTCTCTGACTACAA 380571 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 380570 CATCCAGAAGGAGTCCACCCTCCA 380547 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||||||| | || ||||| | || Sbjct 380977 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAGTCTTCC 380918 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || || | ||||| |||||||| ||| | ||||| Sbjct 380917 GACACCATCGACAACGTT-AAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 380859 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | ||| || || || || || || | | ||||| ||||||||| Sbjct 380858 ACAGCGTTTGATTTTCGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTTCCGACTACAA 380799 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| |||| || || |||| Sbjct 380798 CATCCAAAAGGAGTCCACTCTCCACTTAGT 380769 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| || || ||| | || |||||| | | Sbjct 381661 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTCGAATCTTCT 381602 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || || | ||||| ||||| || ||| | ||||| Sbjct 381601 GATACTATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 381542 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||||| || ||||| || || || || | || || ||| ||||||||| Sbjct 381541 CAAAGACTCATCTTTGCTGGCAAGCAACTCGAGGATGGCCGTACTCTCTCTGACTACAAC 381482 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| | || || || || || Sbjct 381481 ATCCAAAAGGAGTCTACTCTTCACCTCGT 381453 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| |||||||| || || || || || |||||||| | || ||||| | | Sbjct 381890 AATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTC 381831 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| ||||| || |||| ||||| || || || || | |||| Sbjct 381830 TGACACCATCGACAACG-TCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACC 381772 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || | || | ||| || || || ||||| |||| || || || || |||| Sbjct 381771 AACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTACA 381712 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| || || |||| || || Sbjct 381711 ACATCCAAAAAGAATCCACTCTCCA 381687 >seq111 Length=751517 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || || || || ||||||||| |||| ||||| | |||||| | | Sbjct 299039 TTCGTCAAGACCCTTACTGGTAAGACCATCACCCTCGAGGTCGAGTCTTCCGACACCATT 299098 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| || || || ||| | || || ||||| || Sbjct 299099 GACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTT 299158 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || || || || || | | ||||| |||||||||||||| ||| Sbjct 299159 ATCTTCGCTGGTAAGCAACTCGAAGATGGCAGAACCCTTTCTGACTACAACATCCAAAAG 299218 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| | || || || || || | || ||||| || || Sbjct 299219 GAGTCTACTCTTCACCTTGTCCTCCGTTTGAGAGGTGG 299256 >seq90 Length=207308 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| |||| || || | || Sbjct 159289 ATGCAAATTTTCGTCAAGACCCTTACCGGTAAGACCATCACCCTCGAGGTTGAGTCTTCC 159230 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| || ||| | || || Sbjct 159229 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAA 159170 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || || || || |||| || || || || |||||| Sbjct 159169 CAACGTTTGATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACTCTTTCTGATTACAAC 159110 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| | || || || || || Sbjct 159109 ATCCAAAAGGAGTCTACTCTCCACCTTGT 159081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218130920160