Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq87 91.5 2e-13
seq32 87.8 3e-12
>seq87
Length=222757
Score = 91.5 bits (100), Expect = 2e-13
Identities = 256/390 (66%), Gaps = 11/390 (3%)
Strand=Plus/Plus
Query 205482 AGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGT 205541
||| | ||| || || ||||| || ||||| ||| |||||| |||| ||| || |
Sbjct 40565 AGCGATATTGAAGGGGACACCCAAGCCCATGTCACAACTTCTTTGGTACAGTTGGCAGGA 40624
Query 205542 AAGATATTT------ATTATTAA---TTACATGAAATTGT-ACAAAACAATGACAAGGTG 205591
|| | ||| |||| || | |||| ||| || | || ||| ||||| ||||
Sbjct 40625 GAGCTCTTTTCTGCCATTACGAAAGCTAACATAAAACTGAGAGAATACA-TGACAGGGTG 40683
Query 205592 GTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATT 205651
||| | |||||| | | ||| ||| ||||| || | | || || ||| | |
Sbjct 40684 GTAGAGCCATATCATTCATATCGGCAGGGTTCCATGCCGACATGATAATCCTTCGATCAT 40743
Query 205652 CAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTAT 205711
|| | | ||| ||||| || | || || | ||||| | ||| | ||||
Sbjct 40744 ATGGAGTCTCTTTGATTTTTCGAATCACATCTGCCAGCTGATCCACTCCCTTTCCAGTAT 40803
Query 205712 AATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTG 205771
||| |||||| || |||||| ||||||||||||||||||||||| ||||| || |
Sbjct 40804 AATCTGTATCACAGTCTTCATATTTGGCACCAAAATGACGCCATTGAAATCCATAGACAG 40863
Query 205772 GACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATC 205831
| |||| ||| ||||| ||||| | | || ||||| | || | | | | ||
Sbjct 40864 GTCCTAGATCTCCTTCGCGTCTATGCTGTAGTCCTCGTTTATCTAGAAACTCTCTGCTTC 40923
Query 205832 CATTTTCATCCCAAATATGGATTCCTTTAT 205861
||||| ||||||| || || | ||| |||
Sbjct 40924 CATTTCCATCCCATATGTGAACGCCTCTAT 40953
>seq32
Length=396137
Score = 87.8 bits (96), Expect = 3e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || ||||||| || || || || || || ||| | ||| | || |
Sbjct 381890 AATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTC 381831
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || || || | || || |||||||| || |||||||| || || || ||
Sbjct 381830 TGACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 381771
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | | ||||| || || || ||| | || || |||| || | ||||| ||
Sbjct 381770 ACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTACAA 381711
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||||||||| ||| | || ||||| | ||| | || ||||||||
Sbjct 381710 CATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 381660
Score = 86.0 bits (94), Expect = 9e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| | || || || || || ||| | || ||||| |
Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || |||| |||| || || || ||||| || || ||||| || || || ||
Sbjct 381145 GACACCATCGATAATGTTAAGACC-AAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 381087
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | | ||||| || || || ||| | |||||| | || || | ||||| ||
Sbjct 381086 ACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAA 381027
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||||||||| ||| | || ||||| | ||| | || ||||||||
Sbjct 381026 CATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 380976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755454432428800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |