Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq87 91.5 2e-13 seq32 87.8 3e-12 >seq87 Length=222757 Score = 91.5 bits (100), Expect = 2e-13 Identities = 256/390 (66%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 205482 AGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGT 205541 ||| | ||| || || ||||| || ||||| ||| |||||| |||| ||| || | Sbjct 40565 AGCGATATTGAAGGGGACACCCAAGCCCATGTCACAACTTCTTTGGTACAGTTGGCAGGA 40624 Query 205542 AAGATATTT------ATTATTAA---TTACATGAAATTGT-ACAAAACAATGACAAGGTG 205591 || | ||| |||| || | |||| ||| || | || ||| ||||| |||| Sbjct 40625 GAGCTCTTTTCTGCCATTACGAAAGCTAACATAAAACTGAGAGAATACA-TGACAGGGTG 40683 Query 205592 GTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATT 205651 ||| | |||||| | | ||| ||| ||||| || | | || || ||| | | Sbjct 40684 GTAGAGCCATATCATTCATATCGGCAGGGTTCCATGCCGACATGATAATCCTTCGATCAT 40743 Query 205652 CAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTAT 205711 || | | ||| ||||| || | || || | ||||| | ||| | |||| Sbjct 40744 ATGGAGTCTCTTTGATTTTTCGAATCACATCTGCCAGCTGATCCACTCCCTTTCCAGTAT 40803 Query 205712 AATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTG 205771 ||| |||||| || |||||| ||||||||||||||||||||||| ||||| || | Sbjct 40804 AATCTGTATCACAGTCTTCATATTTGGCACCAAAATGACGCCATTGAAATCCATAGACAG 40863 Query 205772 GACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATC 205831 | |||| ||| ||||| ||||| | | || ||||| | || | | | | || Sbjct 40864 GTCCTAGATCTCCTTCGCGTCTATGCTGTAGTCCTCGTTTATCTAGAAACTCTCTGCTTC 40923 Query 205832 CATTTTCATCCCAAATATGGATTCCTTTAT 205861 ||||| ||||||| || || | ||| ||| Sbjct 40924 CATTTCCATCCCATATGTGAACGCCTCTAT 40953 >seq32 Length=396137 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || ||||||| || || || || || || ||| | ||| | || | Sbjct 381890 AATGCAAATCTTCGTAAAGACCCTTACTGGTAAGACCATCACTCTTGAGGTCGAGTCTTC 381831 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || || | || || |||||||| || |||||||| || || || || Sbjct 381830 TGACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 381771 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| || || || ||| | || || |||| || | ||||| || Sbjct 381770 ACAGCGTTTGATTTTCGCTGGTAAGCAACTGGAAGACGGTCGTACTCTTTCTGATTACAA 381711 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | || ||||| | ||| | || |||||||| Sbjct 381710 CATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 381660 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || || || || ||| | || ||||| | Sbjct 381205 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAAGTTGAATCTTCC 381146 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| |||| || || || ||||| || || ||||| || || || || Sbjct 381145 GACACCATCGATAATGTTAAGACC-AAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 381087 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| || || || ||| | |||||| | || || | ||||| || Sbjct 381086 ACAGCGTTTGATTTTCGCTGGTAAGCAACTCGAGGATGGCCGTACTCTTTCTGATTACAA 381027 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | || ||||| | ||| | || |||||||| Sbjct 381026 CATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 380976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454432428800