Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq32 105 8e-18 seq90 89.7 6e-13 >seq32 Length=396137 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| |||| || || | |||| || Sbjct 380541 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCTGCCGTCTTCC 380600 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||||||||||||| || || || || ||||| | || | || ||||||||| | Sbjct 380601 AACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 380660 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || |||| ||| | | | ||||| || || || |||| |||||||| || Sbjct 380661 ATCTTGGTCTTGA-CGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTT 380719 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| |||||||||||||| Sbjct 380720 GCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749 Score = 102 bits (112), Expect = 9e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| || ||||| || |||||||||| ||||| || |||| || Sbjct 381681 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCC 381740 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || |||||||||||||| || | ||||| ||||| | || | | ||||||| | || Sbjct 381741 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT-CTTG 381799 Query 43095 ATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 | | || || |||| ||| | | | ||||| || || || || | |||||||| | Sbjct 381800 AATCTTGGTCTTGA-CGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCT 381858 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || || |||||||| |||||||||||| Sbjct 381859 TACCAGTAAGGGTCTTTACGAAGATTTGCATT 381890 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| || ||||| || |||||||||| ||||| || | || || Sbjct 380997 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCG 381056 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || |||||||||||||| || | ||||| ||||| | || | | ||||||||| | Sbjct 381057 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGG 381116 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | | | | |||||| ||||| || |||| |||||||| || Sbjct 381117 ATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTA 381176 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || ||||||||||| Sbjct 381177 CCAGTCAAGGTCTTGACGAAGATTTGCAT 381205 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || | || || | | || || || |||||||||||||| Sbjct 380786 CTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATCCTCAAGTTGCTTACCAGCGAA 380845 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||| ||||| | || | || |||||||| | || | || || | | ||| Sbjct 380846 AATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGT-CTTGGATCTTGGTCTTAACGT 380904 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | |||||||| || || || || ||||| | Sbjct 380905 TGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTACCAGTGAGGGTCTTGA 380964 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 380965 CGAAGATTTGCAT 380977 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| |||| ||||| | | || || || ||||||||||| || Sbjct 381242 CTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCGAGTTGCTTACCAGCAAA 381301 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || |||| || ||||| | || | | |||||| ||| ||| | || || || | Sbjct 381302 GATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATCC-TGAATCTTGGTCTTAACAT 381360 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || |||| ||||| || || || || || ||||| | Sbjct 381361 TATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGTCTTACCAGTGAGAGTCTTGA 381420 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 381421 CGAAGATTTGCAT 381433 >seq90 Length=207308 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || |||||||||| ||||| || |||| || || ||||||||||| || Sbjct 159098 CTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGCTTACCAGCAAA 159157 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | || || || || | || | | ||||||||| ||| || |||| | Sbjct 159158 GATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACATT 159217 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| |||||||| || || || || ||||| || Sbjct 159218 GTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTAAGGGTCTTGAC 159277 Query 43172 AAAGATTTGCAT 43183 || |||||||| Sbjct 159278 GAAAATTTGCAT 159289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816413478480