Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq78 129 5e-25 >seq78 Length=1347436 Score = 129 bits (142), Expect = 5e-25 Identities = 558/877 (64%), Gaps = 13/877 (1%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| || ||| |||||||| || |||||||| || || || | || || || Sbjct 284255 TTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATGTT 284314 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 ||||| ||||| || ||||| | | | ||| || | | ||| | | ||| Sbjct 284315 CTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCAAGGGAAAGCAA 284374 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 |||||| || || ||||| || || || || ||| | | | |||||||| | | Sbjct 284375 TAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAGAAG 284434 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 || || | || || || || || | ||||| ||| || |||||| | || || Sbjct 284435 ACTACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAATAAT 284494 Query 16183 ATCTCTTACTACA--CTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | | || ||| || ||| || ||| | | ||| ||| | | |||||| Sbjct 284495 CTTTTCAACAACAGACTTCTTA--GGTCTGTTGACAAGGTGGCCAAAAAGCAAACAAGCG 284552 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||| |||| ||||| || | | || ||||| || || || || | ||| ||| Sbjct 284553 AAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCAGGC 284612 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || || || || || || | |||||| ||| |||||||||||||| ||||| ||||| Sbjct 284613 ATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATACCC 284672 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc---tatc 16417 || || || || || ||||| | |||||| | | | || || | || ||| Sbjct 284673 TCGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGG---TAGATTGATCATCAGAGATC 284729 Query 16418 cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477 || || ||||| | || || | |||| ||| ||||| || || |||| || Sbjct 284730 CAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAAC 284789 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 || | || || || ||| ||||||||||| || ||||| || | || Sbjct 284790 AAGAAGTTAGCCTCCTTAGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAGTCTCA 284849 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 | ||| ||||||||||| || || || || || || || | || || | || || Sbjct 284850 GCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATCTGG 284909 Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 || ||| | || || || | | ||| || || || || |||||| || ||||| Sbjct 284910 ACCTCACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGCAAAG 284969 Query 16658 AACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGA--AAGTTTTAACCAGTCA 16714 || || || | | ||||| | | || | ||| | | | | | | ||||||| Sbjct 284970 AAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCATTAAGACGGTGTTCCCAGTCA 285029 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 || ||| ||| | ||| | |||||| ||||||| ||||| || |||| | || Sbjct 285030 CTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGCTTGCTTG 285089 Query 16775 TACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 ||||||| ||| || || | ||| ||||| |||| Sbjct 285090 TACATTTGCCAGATCTCATGGTACTTGATAGGGAACA 285126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511040287600