Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq87 129 5e-25 >seq87 Length=222757 Score = 129 bits (142), Expect = 5e-25 Identities = 394/602 (65%), Gaps = 18/602 (3%) Strand=Plus/Minus Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 || || ||| | || ||||| ||||||||||||||| | |||||||| || |||||| Sbjct 40879 GAAGGAGATCTAGGACCTGTCTATGGATTTCAATGGCGTCATTTTGGTGCCAAATATGAA 40820 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334 ||| | ||| ||||| |||| | ||||| ||||| | | |||| ||| | Sbjct 40819 GACTGTGATACAGATTATACTGGAAAGGGAGTGGATCAGCTGGCAGATGTGATTCGAAAA 40760 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394 || ||| || ||| | || |||| ||||| | | || |||||| || ||| || Sbjct 40759 ATCAAAGAGACTCCATATGATCGAAGGATTATCATGTCGGCATGGAACCCTGCCGATATG 40700 Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTT-GC-----TAAT 20448 | |||||| | || || |||||| | | | || ||||| ||| || |||| Sbjct 40699 AATGATATGGCTCTACCACCCTGTCATGTATTCTCTCAGTTTTATGTTAGCTTTCGTAAT 40640 Query 20449 ------AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTT 20502 || || | || || ||| |||| ||| || ||| ||||| ||||||| Sbjct 40639 GGCAGAAAAGAGCTCTCCTGCCAACTGTACCAAAGAAGTTGTGACATGGGCTTGGGTGTC 40580 Query 20503 CCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTA 20562 || |||||||| || || ||| |||| || | ||||| || || || | || Sbjct 40579 CCCTTCAATATCGCTTCCTACGCGTTGCTAACAAAGATGATCGCTCAAGTATGTGGAATA 40520 Query 20563 AAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAA 20622 | || || || |||| || || ||||| || || | || | | ||| | || Sbjct 40519 GAGTGTGGCGATTTCATCCATACAATGGGAGATGCTCACGTCTATGCTGACCATGTTGAC 40460 Query 20623 CCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGA 20682 | | | | | || | ||||| ||| | | | || || ||| | || || | || Sbjct 40459 GCACTTAGAGTCCAAATCGCACGAACACCTACAAACTTTCCCACTTTACGTTTTGCAAGA 40400 Query 20683 ACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCC 20742 ||| | ||||||| ||||||||| | ||| |||||| | | ||||| || || || Sbjct 40399 GATGTAACAGATATTGACGATTTTAGATATGAAGATTTTATTGTTGAAGGATACAAGCCG 40340 Query 20743 CATAATTCAA-TTCCA-ATGGAAATGTCTGTTTAAT-ATATATTCCAATAAACTAAATTT 20799 | ||| ||| || | ||| ||||||||||||||| |||||| ||| | | | |||||| Sbjct 40339 C--AATCCAAGATCGAGATGAAAATGTCTGTTTAATGATATATACCAGT-ACCGAAATTT 40283 Query 20800 TA 20801 || Sbjct 40282 TA 40281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183192400870