Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq78 116 4e-21 >seq78 Length=1347436 Score = 116 bits (128), Expect = 4e-21 Identities = 567/891 (64%), Gaps = 21/891 (2%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 |||||| || ||| ||||| || || ||||| ||||| ||||| || || || || Sbjct 284255 TTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATGTT 284314 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 ||||| ||||| || ||||| || | | | || || | || || | | Sbjct 284315 CTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCAAGGGAAAGCAA 284374 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 |||||| || || | |||||||| |||||| |||| | | | |||||| || | || Sbjct 284375 TAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAGAAG 284434 Query 14092 TTTTACA-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | ||| || | || || || ||||| ||||| ||| ||||| || | |||| Sbjct 284435 ACT-ACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAATAA 284493 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACAC 14206 | | || || || ||| | | || || || ||||| ||||| Sbjct 284494 TCTTTTCAACAACAGACTTCTTAGG----TCTGTTGACAAGGTGGCCAAAAAGCAAACAA 284549 Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 || |||||| || | ||| ||||| | | ||| | || || || || || || || Sbjct 284550 GCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCA 284609 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 ||||| | || || || || |||||||| || ||| ||||| || || ||||| || Sbjct 284610 GGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATA 284669 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 ||||| || ||||| || || | | || || |||| | | || | | || ||| Sbjct 284670 CCCTCGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGAGATC 284729 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 || || ||||| |||| || || |||||| || || | |||||||||| || Sbjct 284730 CAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAAC 284789 Query 14447 AA-ATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || | ||| ||| |||| | ||||| || | ||||||||||||||| || | Sbjct 284790 AAGAAGTTAGC-CTCCTTAGCATCCTTGATAT--AAGTATCAATAAGTAAGGAGTAAGTC 284846 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14563 |||| || || || ||||| || || || || || ||||| | || || | Sbjct 284847 TCAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATC 284906 Query 14564 TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14623 || ||||| | ||||| || | | || ||||| || |||||||| || ||| Sbjct 284907 TGGACCTCACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGCA 284966 Query 14624 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGA---GTTTTTTCCAA 14680 || || || | | |||||| || ||| |||| | | | | || ||| Sbjct 284967 AAGAAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCATTAAGACGGTGTTCCCAG 285026 Query 14681 TCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTT 14739 || |||| |||||| |||||| | || ||| | ||||| ||| || |||||| Sbjct 285027 TC-ACTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGCTTG 285085 Query 14740 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14790 || |||||| ||| || || | || ||||| || | |||||||| Sbjct 285086 CTTGTACATTTGCCAGATCTCATGGTACTTGATAGGGAACAAGACAAATCT 285136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344599132880