Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq32 93.3 3e-14
>seq32
Length=396137
Score = 93.3 bits (102), Expect = 3e-14
Identities = 165/237 (70%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149
||| |||| || || || || | || |||| ||| || || || || || || ||||||
Sbjct 380515 TTTAGTTA-CCGCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTG 380573
Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209
||||| | | ||| | | |||||||| || || || || ||||||| | ||||||
Sbjct 380574 TAGTCAGAGAGGGTTCTGCCGTCTTCCAACTGCTTACCAGCGAAGATAAGACGTTGTTGG 380633
Query 18210 TCCACGGGCACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACC 18268
|| ||| | ||| ||||| || | | ||| | |||||| | | | ||||||
Sbjct 380634 TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGT-CTTGACGTTGTCGATGGTGTCAGA 380692
Query 18269 GGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| |||| || | ||||||| | |||||||||| || || ||||| ||||||||
Sbjct 380693 AGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 380749
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | |||||| || || || ||||| ||||||||||| |
Sbjct 381435 CCACCACGGAGACGAAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAG 381494
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | ||| || | ||| ||||| ||| |||| ||||||||||| || |||
Sbjct 381495 AGAGTACGGCCATCCTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGA 381554
Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || ||||| || | | ||| | |||||| | ||| ||| ||| | |||
Sbjct 381555 ATACCCTCCTTGTCTTGGATCTTGGT-CTTGACATTGTCAATAGTATCAGAAGATTCGAC 381613
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| ||| || | ||||| ||||| || || || || ||||||||
Sbjct 381614 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379343232539670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |