Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq155 246 3e-60 seq79 172 5e-38 seq78 170 2e-37 >seq155 Length=566151 Score = 246 bits (272), Expect = 3e-60 Identities = 1205/1886 (64%), Gaps = 70/1886 (4%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || |||||||| | ||||||| ||| |||| |||||||| | |||||||||||| || Sbjct 483812 TCGACTGTGAACTGTATAGGAGCTGAAGCCGCTTTTGTTCGTAAATAATACATTCCTGTC 483753 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGC-GTATGTAGGATT 36908 || || ||| |||| ||||| ||||||||||| || ||||| | ||| || ||||| Sbjct 483752 TTGAGTCCCTTCTTCCAGCCGTAGAAATGCATACTAGTAAGTTTGCCAGTA-GTGGGATT 483694 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | || | || |||| |||| || || || | ||| | |||||| ||||| Sbjct 483693 TTTCATGAAAATATTCATACTTTGAGACTGGTCAATGTATCGACCGCGGTCGGCGGCCAT 483634 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 || | || ||| || | ||||| |||| |||||||| | || | || | Sbjct 483633 ATCGATTATCACTTTCTGGCTCAATTCCCAGGCCGTCTTATATATCTCCTTCAAATCGCC 483574 Query 37029 TGGTAAATC-TAAATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGTC 37085 ||| | || | |||||| | ||||| |||| || | || | | | | || || Sbjct 483573 TGGAATCTCATTAATGTTTTGGATAGAGCCATCTTGACTAATTATCATGTGCCTGATATC 483514 Query 37086 ATTATTCCACATATTTCTACTTAT--TAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 | |||||||| | ||| || ||| || || | || | | ||| |||| || Sbjct 483513 AGCATTCCACAAAC--CTAATTGGGCTAGATCCCTTACAAGATATTCATTGACAATTTGG 483456 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || ||||| | || | || ||||||||||| || |||||||| |||| Sbjct 483455 AATTCGCCAGAAAGGACCCGTCGAGTATATATATTTGATGTGATTGGTTCAAAACACTCG 483396 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || || | ||||| || || || || || ||||||||||| | | | ||| Sbjct 483395 TTGAAACCAAGAATTTGCGAAGTCGAAGCGGTGGGCATTGGTGCGACAACTAAAGAATTC 483336 Query 37264 CTCAATCCA---TGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTT 37320 || | |||| | | | || || | ||| || || | ||| ||||||||||| || Sbjct 483335 CTAAGTCCAAACTCGGAAATA--TCACGCTTTAAGCTC-TCCCAGTCCCATAAATCCGTC 483279 Query 37321 GGGTT---------CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAA 37371 | || || ||||| ||| |||| | || || || || |||||| Sbjct 483278 GCCTTGAAATCAGGCTCACCCCACAAATCGAATTGCAACATCCCCTTCGAAGCGGGAGAA 483219 Query 37372 TCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT---TCTAGT 37428 | ||| | || || ||||||| ||| ||||| || || ||||| || | | Sbjct 483218 CCCGAATAACTATCGTATGGTCCGTTTTCTTTGGCTAGCTC-CA--TAGATGCCTCGACT 483162 Query 37429 GCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG 37488 || |||| |||||| ||||| || ||||| | ||| | || | | ||||| || Sbjct 483161 GCCGCATGATATATAGTTTCAAATATTTGCACATTAAGTAATCTGGCTTCAGACGAGTCA 483102 Query 37489 AATG-CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 |||| |||| | || | ||| | ||| ||||| || || || |||| | ||||||| Sbjct 483101 AATGGCATA-CGCAGTTTCATATAAGTATCTGCCAATCCTTGGACTCCGACAGCTATGGG 483043 Query 37548 TCTATGTTTCTTATTAGATCTAGACG---ATTCTATCACTGGATAATAATTGATATCTAT 37604 ||| |||||| |||||| || || |||| | | ||||| | |||||| ||||| Sbjct 483042 TCTGTGTTTCACATTAGACCTCCTCGCAGATTCGA---CGGGATAGTCATTGATGTCTAT 482986 Query 37605 TATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTGTCGAA--CAT 37661 || || || |||||| || | | || ||| | || | | | || ||| || || ||| Sbjct 482985 GATCTTGTTCAGATTTCTAGCGACTACTTTGGCAACT-TCATGAAGCTTTTCAAAGTCAT 482927 Query 37662 AA-ATACGTTATTAT-----------TA----ACAAATTTACTCAACGAAATAGATCCTA 37705 | |||| | | || || ||||| | |||| ||||| | | Sbjct 482926 ACCATACCTCAACATCGTCCTCGTCGTAGTGTACAAACGTTGGTAACGCTATAGAGGCGA 482867 Query 37706 GATTACATACAGCAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTA 37764 ||||||| ||||| ||||| | || || |||||| || || ||||| | ||| Sbjct 482866 GATTACAAACAGCGGTCTCATCAG-GAGACGAATATTGTACTATTTCGGTACACAAATTT 482808 Query 37765 CTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATAT 37824 |||| ||||||| || | ||| | || || || || || || | |||||||||| Sbjct 482807 GACGATTTAATTGTGCCAAGATTATTCTGGTTTGACTTCCGGTTGCATGCATCTTTATAT 482748 Query 37825 AGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT 37884 || ||| | || | || || || || || || | || | ||| || ||||| Sbjct 482747 AGCATAAATGGATTACCAGTCTCGATCTGTGCTTCTAGTATCGCAAACCA-AAGCTTCTG 482689 Query 37885 G-CTTTAACGAT-CGCTTTAAtttttttCTTTGTTTCGTAT-TCTATA-TATAATTTGTT 37940 | ||||||| | ||| |||| | ||| ||| || || || ||||| | Sbjct 482688 GGCTTTAACTTTGCGC---AATTGTCGATTTTCCTTCTCATATCGATTGTATAACGCTTC 482632 Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCG-CATGGACACATTAGAGACC 37999 ||| |||| || | ||||| || || || | | ||| | | | ||| ||| Sbjct 482631 AAATTCATCTCCATAAACATCTGCCAAGCCAGGTGCCTGGTCATT-AGAAAAAAGACACC 482573 Query 38000 ATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATA 38059 ||||||||| | | || | |||||| ||||| || | ||| | || ||||| Sbjct 482572 ATTCTTCATTATCGTGGACTTTCTTCATAAACAAATCCGGGATCCAGAGAGCGTAAAATA 482513 Query 38060 AATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATA 38119 |||| | ||| || || || || || || | ||| || || | ||||| Sbjct 482512 GATCTCGAGCTCTCAGCTCCTCTTTGCCATGGTTTTTCCGCAAGTCTAAGAATTGGAATA 482453 Query 38120 TATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCT 38179 ||||| | ||||| ||||||| |||||| | | || || || | || | || || | Sbjct 482452 TATCACCATGCCAAGGTTCTAAATAAATAGCAAAAGCACCAGGCCGCTTGTTTCCGCCTT 482393 Query 38180 GATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATT 38239 ||| | ||| | | | || ||||| || | || |||||| || || || || || || Sbjct 482392 GATCGACATACCGAGCAGTATTATTGTAAACTCGTAACATTGGCACAATTCCGTTCGAAG 482333 Query 38240 TGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTA 38299 | || || | || | ||||| || || | | || |||||| || | || | Sbjct 482332 TTCCATTGCTTCCAGCAATATACGTTCCAGTGGAACGAATATTATGTACATGAAGGCCAA 482273 Query 38300 TTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTA 38359 ||||||| ||| ||| ||||| | || || | || || ||||| | ||||| || | Sbjct 482272 TTCCACCGGCAGTTTTAGATATCATCGCACAATCCTTCAAGGTATCGTAAATACCCTCGA 482213 Query 38360 TACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGG 38419 || ||||| | || | | || ||| ||| || | |||||| || || || | Sbjct 482212 TAGAATCATCTCTCATAGCCACTAAAAAGCAAGACGATAGTTGAGGATTGGGTGTACCAG 482153 Query 38420 CGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTT 38479 |||||||| || || || ||||| |||| ||||||| |||| | |||||||| Sbjct 482152 AATTAAATAAAGTTGGTGAAGCATGAGTGAAGTATTTTTCAGACATCAATCGATATGTTT 482093 Query 38480 CTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTT 38539 |||| || | |||||| ||||| ||||| | || || ||||||| ||| |||| Sbjct 482092 CTATCACCTTTGGAATATCATTTCCGTGGATACCCACAGCCACTCTCATTAACATCTGTT 482033 Query 38540 GTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTA 38599 | || || || | ||| | | |||||| | |||||| |||| | || || Sbjct 482032 GGGGCCTCTCGACGATTCTGCCGAACATTTTAAGCAAATACGACCTTTCAAGAGTCTTGT 481973 Query 38600 TTCCAAAATAACTATATGAATAATCT 38625 ||||||||| ||||| |||||| Sbjct 481972 ACCCAAAATAAGTATATTCGTAATCT 481947 >seq79 Length=299291 Score = 172 bits (190), Expect = 5e-38 Identities = 465/699 (67%), Gaps = 17/699 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||||| |||||| || || | || || | || || ||||| || || Sbjct 119938 TCAACGGTGAATTGAATAGGAGCAGAAGCTGCTTGAGTACGCAGGTAGTACATACCTGTC 119879 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGATT 36908 || || ||| | |||||| || |||||||||||||||| || || || |||||| Sbjct 119878 TTGAGACCCTTTTGCCATCCATAGAAATGCATACTGGTCAACTT-GCCCATAGTAGGAGC 119820 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | ||||| || ||| |||||||||||||| ||| | ||| | | ||| || ||||| Sbjct 119819 TTGGATATAGATGTTCAAAGATTGACTTTGATCAATATATGCAGCACGGTCAGCAGCCAT 119760 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 || | || |||||||| | ||||||||| || || |||| || || | ||| Sbjct 119759 ATCAATGATTGTCTTTTGAGAGAGCTCCCAAACAGTCTTGTATAAAGCCTTGATGTCATC 119700 Query 37029 TGGTAAATCTAA---ATG--TTGAATAGAACCATTATGTAAC-ACAATTGTATTCTTTAT 37082 || ||| | | ||| ||||||||||||||| || | | ||| | ||||| || Sbjct 119699 AGG--AATGTTAGGGATGTTTTGAATAGAACCATT-GCTAGCAATGATTCTGTTCTTCAT 119643 Query 37083 GTCATTATTCCACATATTTCTACT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 || | | ||||| || | | | | || || |||| | | | || |||| || Sbjct 119642 GTTTTCACCCCACA-ATCCCAAGTCGACAAGATCCTTCAACAACCATTGGTTGACAATCT 119584 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 | || ||||||| | ||||| | | || || ||| || || || |||| | | Sbjct 119583 GGAACTCTCCAGCAAGGACTCTACGAGAGTAGATGTTGGATGTGTAAGGCTCAAAACATT 119524 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||| |||| | ||||| || || || ||||||||||| || || | ||||| | Sbjct 119523 CATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGCATAGGAGCAACGAGAAGAGAGT 119464 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 |||| | || || || || |||| || || | ||||||||||| ||| || | Sbjct 119463 TTCTAAGACCGTGCTTAGCCATCTTCTTCTTAAGAGTAGCCCAATCCCATAGATCAGTGG 119404 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | | |||||| || ||||||| || ||| ||| || ||||| | | ||| | Sbjct 119403 GAGTAACATCCCACATGTCGTATTGTAAAAGACCCTTAGAAGCAGGAGATCCCTCATAGG 119344 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAGTGCGGCATAATA 37439 |||| || | || || | | ||| |||| ||| | |||||||| || |||| || Sbjct 119343 TCTCGTAGGCGCCATATTTCTCAGCAAGTT--CAATTGAAGATTCTACAGCAGCATGGTA 119286 Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478 || ||||| | ||||| || || ||| || ||||| Sbjct 119285 AATGGTTTCAGAGATTTGAATGTTCAATTGCTTGGCTTC 119247 >seq78 Length=1347436 Score = 170 bits (188), Expect = 2e-37 Identities = 574/879 (65%), Gaps = 26/879 (3%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 ||||| || ||| |||| || | ||||| |||||||||||||| || || || | Sbjct 284256 TTTTGGTAGTCAGAGACTC-TCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATGTT 284314 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTT----TTCACAACCTAACTCTG 11453 |||||| || || |||||| ||||| |||| || || ||| || | Sbjct 284315 CTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCAAGGGAAAGC-- 284372 Query 11454 TTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTA 11513 |||||||| || ||||| || || || || ||| |||| | | |||||| || | Sbjct 284373 --AATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAA 284430 Query 11514 TAAGATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATG 11572 |||| | || || | ||| | ||||| || |||||||| ||| || || ||| | Sbjct 284431 GAAGA-CTACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTA 284489 Query 11573 ATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACAC 11632 || ||| | ||| ||| ||| | | | || ||| | ||||| Sbjct 284490 ATAATCTTTTCAACAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCAAAAAGCAAACAA 284549 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 || |||||| || | ||||| || | | || | |||||||| || || || || Sbjct 284550 GCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCA 284609 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||| | || || || || | |||||| ||| ||||||||||||||| ||||| || Sbjct 284610 GGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATA 284669 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATC 11809 ||||| ||||| || || || || | | || || | || ||| | | ||| ||| Sbjct 284670 CCCTCGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGAGATC 284729 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 || || |||||| ||||| ||||| || | || || | || ||||| | || Sbjct 284730 CAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAAC 284789 Query 11870 AAATGCATTTTTTCTA--TATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 || | | || || || ||| | | ||| ||||| || | ||| || | | Sbjct 284790 AA--GAAGTTAGCCTCCTTAGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAGTCT 284847 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT 11987 | | ||| ||||| ||||| ||||| ||||| |||||||| ||||| | | || Sbjct 284848 CAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATCT 284907 Query 11988 GTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 | || || || | ||||| || | | |||||||| ||||||||||| | |||| Sbjct 284908 GGACCTCACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGCAA 284967 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA----TTTATCCCAA 12103 | || || || | | | |||||| || | || || | | |||| | ||||| Sbjct 284968 AGAAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCA-TTAAGACGGTGTTCCCAG 285026 Query 12104 TCATCTAA-ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 ||| |||| ||| ||| | ||| | |||||| | ||||| ||| ||| | | ||| Sbjct 285027 TCA-CTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGCTTG 285085 Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAA 12201 || ||||||| |||||| ||||| ||||| |||||||| Sbjct 285086 CTTGTACATTTGCCAGATCTCATGGTACTTGATAGGGAA 285124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523827811040