Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq155 246 3e-60
seq79 172 5e-38
seq78 170 2e-37
>seq155
Length=566151
Score = 246 bits (272), Expect = 3e-60
Identities = 1205/1886 (64%), Gaps = 70/1886 (4%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| |||||||| | ||||||| ||| |||| |||||||| | |||||||||||| ||
Sbjct 483812 TCGACTGTGAACTGTATAGGAGCTGAAGCCGCTTTTGTTCGTAAATAATACATTCCTGTC 483753
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGC-GTATGTAGGATT 36908
|| || ||| |||| ||||| ||||||||||| || ||||| | ||| || |||||
Sbjct 483752 TTGAGTCCCTTCTTCCAGCCGTAGAAATGCATACTAGTAAGTTTGCCAGTA-GTGGGATT 483694
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
| || | || |||| |||| || || || | ||| | |||||| |||||
Sbjct 483693 TTTCATGAAAATATTCATACTTTGAGACTGGTCAATGTATCGACCGCGGTCGGCGGCCAT 483634
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028
|| | || ||| || | ||||| |||| |||||||| | || | || |
Sbjct 483633 ATCGATTATCACTTTCTGGCTCAATTCCCAGGCCGTCTTATATATCTCCTTCAAATCGCC 483574
Query 37029 TGGTAAATC-TAAATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGTC 37085
||| | || | |||||| | ||||| |||| || | || | | | | || ||
Sbjct 483573 TGGAATCTCATTAATGTTTTGGATAGAGCCATCTTGACTAATTATCATGTGCCTGATATC 483514
Query 37086 ATTATTCCACATATTTCTACTTAT--TAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143
| |||||||| | ||| || ||| || || | || | | ||| |||| ||
Sbjct 483513 AGCATTCCACAAAC--CTAATTGGGCTAGATCCCTTACAAGATATTCATTGACAATTTGG 483456
Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203
|| || ||||| | || | || ||||||||||| || |||||||| ||||
Sbjct 483455 AATTCGCCAGAAAGGACCCGTCGAGTATATATATTTGATGTGATTGGTTCAAAACACTCG 483396
Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263
|| || | ||||| || || || || || ||||||||||| | | | |||
Sbjct 483395 TTGAAACCAAGAATTTGCGAAGTCGAAGCGGTGGGCATTGGTGCGACAACTAAAGAATTC 483336
Query 37264 CTCAATCCA---TGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTT 37320
|| | |||| | | | || || | ||| || || | ||| ||||||||||| ||
Sbjct 483335 CTAAGTCCAAACTCGGAAATA--TCACGCTTTAAGCTC-TCCCAGTCCCATAAATCCGTC 483279
Query 37321 GGGTT---------CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAA 37371
| || || ||||| ||| |||| | || || || || ||||||
Sbjct 483278 GCCTTGAAATCAGGCTCACCCCACAAATCGAATTGCAACATCCCCTTCGAAGCGGGAGAA 483219
Query 37372 TCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT---TCTAGT 37428
| ||| | || || ||||||| ||| ||||| || || ||||| || | |
Sbjct 483218 CCCGAATAACTATCGTATGGTCCGTTTTCTTTGGCTAGCTC-CA--TAGATGCCTCGACT 483162
Query 37429 GCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCG 37488
|| |||| |||||| ||||| || ||||| | ||| | || | | ||||| ||
Sbjct 483161 GCCGCATGATATATAGTTTCAAATATTTGCACATTAAGTAATCTGGCTTCAGACGAGTCA 483102
Query 37489 AATG-CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547
|||| |||| | || | ||| | ||| ||||| || || || |||| | |||||||
Sbjct 483101 AATGGCATA-CGCAGTTTCATATAAGTATCTGCCAATCCTTGGACTCCGACAGCTATGGG 483043
Query 37548 TCTATGTTTCTTATTAGATCTAGACG---ATTCTATCACTGGATAATAATTGATATCTAT 37604
||| |||||| |||||| || || |||| | | ||||| | |||||| |||||
Sbjct 483042 TCTGTGTTTCACATTAGACCTCCTCGCAGATTCGA---CGGGATAGTCATTGATGTCTAT 482986
Query 37605 TATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTGTCGAA--CAT 37661
|| || || |||||| || | | || ||| | || | | | || ||| || || |||
Sbjct 482985 GATCTTGTTCAGATTTCTAGCGACTACTTTGGCAACT-TCATGAAGCTTTTCAAAGTCAT 482927
Query 37662 AA-ATACGTTATTAT-----------TA----ACAAATTTACTCAACGAAATAGATCCTA 37705
| |||| | | || || ||||| | |||| ||||| | |
Sbjct 482926 ACCATACCTCAACATCGTCCTCGTCGTAGTGTACAAACGTTGGTAACGCTATAGAGGCGA 482867
Query 37706 GATTACATACAGCAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTA 37764
||||||| ||||| ||||| | || || |||||| || || ||||| | |||
Sbjct 482866 GATTACAAACAGCGGTCTCATCAG-GAGACGAATATTGTACTATTTCGGTACACAAATTT 482808
Query 37765 CTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATAT 37824
|||| ||||||| || | ||| | || || || || || || | ||||||||||
Sbjct 482807 GACGATTTAATTGTGCCAAGATTATTCTGGTTTGACTTCCGGTTGCATGCATCTTTATAT 482748
Query 37825 AGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT 37884
|| ||| | || | || || || || || || | || | ||| || |||||
Sbjct 482747 AGCATAAATGGATTACCAGTCTCGATCTGTGCTTCTAGTATCGCAAACCA-AAGCTTCTG 482689
Query 37885 G-CTTTAACGAT-CGCTTTAAtttttttCTTTGTTTCGTAT-TCTATA-TATAATTTGTT 37940
| ||||||| | ||| |||| | ||| ||| || || || ||||| |
Sbjct 482688 GGCTTTAACTTTGCGC---AATTGTCGATTTTCCTTCTCATATCGATTGTATAACGCTTC 482632
Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCG-CATGGACACATTAGAGACC 37999
||| |||| || | ||||| || || || | | ||| | | | ||| |||
Sbjct 482631 AAATTCATCTCCATAAACATCTGCCAAGCCAGGTGCCTGGTCATT-AGAAAAAAGACACC 482573
Query 38000 ATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATA 38059
||||||||| | | || | |||||| ||||| || | ||| | || |||||
Sbjct 482572 ATTCTTCATTATCGTGGACTTTCTTCATAAACAAATCCGGGATCCAGAGAGCGTAAAATA 482513
Query 38060 AATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATA 38119
|||| | ||| || || || || || || | ||| || || | |||||
Sbjct 482512 GATCTCGAGCTCTCAGCTCCTCTTTGCCATGGTTTTTCCGCAAGTCTAAGAATTGGAATA 482453
Query 38120 TATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCT 38179
||||| | ||||| ||||||| |||||| | | || || || | || | || || |
Sbjct 482452 TATCACCATGCCAAGGTTCTAAATAAATAGCAAAAGCACCAGGCCGCTTGTTTCCGCCTT 482393
Query 38180 GATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATT 38239
||| | ||| | | | || ||||| || | || |||||| || || || || || ||
Sbjct 482392 GATCGACATACCGAGCAGTATTATTGTAAACTCGTAACATTGGCACAATTCCGTTCGAAG 482333
Query 38240 TGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTA 38299
| || || | || | ||||| || || | | || |||||| || | || |
Sbjct 482332 TTCCATTGCTTCCAGCAATATACGTTCCAGTGGAACGAATATTATGTACATGAAGGCCAA 482273
Query 38300 TTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTA 38359
||||||| ||| ||| ||||| | || || | || || ||||| | ||||| || |
Sbjct 482272 TTCCACCGGCAGTTTTAGATATCATCGCACAATCCTTCAAGGTATCGTAAATACCCTCGA 482213
Query 38360 TACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGG 38419
|| ||||| | || | | || ||| ||| || | |||||| || || || |
Sbjct 482212 TAGAATCATCTCTCATAGCCACTAAAAAGCAAGACGATAGTTGAGGATTGGGTGTACCAG 482153
Query 38420 CGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTT 38479
|||||||| || || || ||||| |||| ||||||| |||| | ||||||||
Sbjct 482152 AATTAAATAAAGTTGGTGAAGCATGAGTGAAGTATTTTTCAGACATCAATCGATATGTTT 482093
Query 38480 CTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTT 38539
|||| || | |||||| ||||| ||||| | || || ||||||| ||| ||||
Sbjct 482092 CTATCACCTTTGGAATATCATTTCCGTGGATACCCACAGCCACTCTCATTAACATCTGTT 482033
Query 38540 GTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTA 38599
| || || || | ||| | | |||||| | |||||| |||| | || ||
Sbjct 482032 GGGGCCTCTCGACGATTCTGCCGAACATTTTAAGCAAATACGACCTTTCAAGAGTCTTGT 481973
Query 38600 TTCCAAAATAACTATATGAATAATCT 38625
||||||||| ||||| ||||||
Sbjct 481972 ACCCAAAATAAGTATATTCGTAATCT 481947
>seq79
Length=299291
Score = 172 bits (190), Expect = 5e-38
Identities = 465/699 (67%), Gaps = 17/699 (2%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||| ||||||| |||||| || || | || || | || || ||||| || ||
Sbjct 119938 TCAACGGTGAATTGAATAGGAGCAGAAGCTGCTTGAGTACGCAGGTAGTACATACCTGTC 119879
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTAT-GTAGGATT 36908
|| || ||| | |||||| || |||||||||||||||| || || || ||||||
Sbjct 119878 TTGAGACCCTTTTGCCATCCATAGAAATGCATACTGGTCAACTT-GCCCATAGTAGGAGC 119820
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
| ||||| || ||| |||||||||||||| ||| | ||| | | ||| || |||||
Sbjct 119819 TTGGATATAGATGTTCAAAGATTGACTTTGATCAATATATGCAGCACGGTCAGCAGCCAT 119760
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028
|| | || |||||||| | ||||||||| || || |||| || || | |||
Sbjct 119759 ATCAATGATTGTCTTTTGAGAGAGCTCCCAAACAGTCTTGTATAAAGCCTTGATGTCATC 119700
Query 37029 TGGTAAATCTAA---ATG--TTGAATAGAACCATTATGTAAC-ACAATTGTATTCTTTAT 37082
|| ||| | | ||| ||||||||||||||| || | | ||| | ||||| ||
Sbjct 119699 AGG--AATGTTAGGGATGTTTTGAATAGAACCATT-GCTAGCAATGATTCTGTTCTTCAT 119643
Query 37083 GTCATTATTCCACATATTTCTACT-TATTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141
|| | | ||||| || | | | | || || |||| | | | || |||| ||
Sbjct 119642 GTTTTCACCCCACA-ATCCCAAGTCGACAAGATCCTTCAACAACCATTGGTTGACAATCT 119584
Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201
| || ||||||| | ||||| | | || || ||| || || || |||| | |
Sbjct 119583 GGAACTCTCCAGCAAGGACTCTACGAGAGTAGATGTTGGATGTGTAAGGCTCAAAACATT 119524
Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261
|||| |||| | ||||| || || || ||||||||||| || || | ||||| |
Sbjct 119523 CATTGTTACCGAGGATTTGGGAGGTCGAAGCAGTAGGCATAGGAGCAACGAGAAGAGAGT 119464
Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321
|||| | || || || || |||| || || | ||||||||||| ||| || |
Sbjct 119463 TTCTAAGACCGTGCTTAGCCATCTTCTTCTTAAGAGTAGCCCAATCCCATAGATCAGTGG 119404
Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381
| | |||||| || ||||||| || ||| ||| || ||||| | | ||| |
Sbjct 119403 GAGTAACATCCCACATGTCGTATTGTAAAAGACCCTTAGAAGCAGGAGATCCCTCATAGG 119344
Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAGTGCGGCATAATA 37439
|||| || | || || | | ||| |||| ||| | |||||||| || |||| ||
Sbjct 119343 TCTCGTAGGCGCCATATTTCTCAGCAAGTT--CAATTGAAGATTCTACAGCAGCATGGTA 119286
Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478
|| ||||| | ||||| || || ||| || |||||
Sbjct 119285 AATGGTTTCAGAGATTTGAATGTTCAATTGCTTGGCTTC 119247
>seq78
Length=1347436
Score = 170 bits (188), Expect = 2e-37
Identities = 574/879 (65%), Gaps = 26/879 (3%)
Strand=Plus/Plus
Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397
||||| || ||| |||| || | ||||| |||||||||||||| || || || |
Sbjct 284256 TTTTGGTAGTCAGAGACTC-TCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATGTT 284314
Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTT----TTCACAACCTAACTCTG 11453
|||||| || || |||||| ||||| |||| || || ||| || |
Sbjct 284315 CTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCAAGGGAAAGC-- 284372
Query 11454 TTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTA 11513
|||||||| || ||||| || || || || ||| |||| | | |||||| || |
Sbjct 284373 --AATAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAA 284430
Query 11514 TAAGATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATG 11572
|||| | || || | ||| | ||||| || |||||||| ||| || || ||| |
Sbjct 284431 GAAGA-CTACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTA 284489
Query 11573 ATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACAC 11632
|| ||| | ||| ||| ||| | | | || ||| | |||||
Sbjct 284490 ATAATCTTTTCAACAACAGACTTCTTAGGTCTGTTGACAAGGTGGCCAAAAAGCAAACAA 284549
Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692
|| |||||| || | ||||| || | | || | |||||||| || || || ||
Sbjct 284550 GCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCA 284609
Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752
||||| | || || || || | |||||| ||| ||||||||||||||| ||||| ||
Sbjct 284610 GGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATA 284669
Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATC 11809
||||| ||||| || || || || | | || || | || ||| | | ||| |||
Sbjct 284670 CCCTCGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGAGATC 284729
Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869
|| || |||||| ||||| ||||| || | || || | || ||||| | ||
Sbjct 284730 CAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAAC 284789
Query 11870 AAATGCATTTTTTCTA--TATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927
|| | | || || || ||| | | ||| ||||| || | ||| || | |
Sbjct 284790 AA--GAAGTTAGCCTCCTTAGCATCCTTGATATAAGTATCAATAAGTAAGGAGTAAGTCT 284847
Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT 11987
| | ||| ||||| ||||| ||||| ||||| |||||||| ||||| | | ||
Sbjct 284848 CAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATCT 284907
Query 11988 GTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047
| || || || | ||||| || | | |||||||| ||||||||||| | ||||
Sbjct 284908 GGACCTCACCAGAGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGCAA 284967
Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA----TTTATCCCAA 12103
| || || || | | | |||||| || | || || | | |||| | |||||
Sbjct 284968 AGAAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCA-TTAAGACGGTGTTCCCAG 285026
Query 12104 TCATCTAA-ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162
||| |||| ||| ||| | ||| | |||||| | ||||| ||| ||| | | |||
Sbjct 285027 TCA-CTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGCTTG 285085
Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAA 12201
|| ||||||| |||||| ||||| ||||| ||||||||
Sbjct 285086 CTTGTACATTTGCCAGATCTCATGGTACTTGATAGGGAA 285124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468523827811040
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