Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq78 125 7e-24 >seq78 Length=1347436 Score = 125 bits (138), Expect = 7e-24 Identities = 567/890 (64%), Gaps = 19/890 (2%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 |||||| || ||| ||||| || || ||||| ||||| ||||| || || || || Sbjct 284255 TTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATGTT 284314 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| ||||| || ||||| | | | | || || | || || | | Sbjct 284315 CTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCAAGGGAAAGCAA 284374 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||| ||||| | ||||||||| |||||| |||| | | | |||||| || | || Sbjct 284375 TAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAGAAG 284434 Query 13760 TTTTACA-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||| || | || || || ||||| ||||| ||| ||||| || | |||| Sbjct 284435 ACT-ACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAATAA 284493 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACAC 13874 | || || || || ||| | | || || || ||||| ||||| Sbjct 284494 TCTTTTCAACAACAGACTTCTTAGG----TCTGTTGACAAGGTGGCCAAAAAGCAAACAA 284549 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 || |||||| || | ||| ||||| | | ||| | || || || || || || || Sbjct 284550 GCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCA 284609 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| | || || || || |||||||| || ||||||||| || || ||||| || Sbjct 284610 GGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATA 284669 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 ||||| || ||||| || || | | || || |||| | | || | | || ||| Sbjct 284670 CCCTCGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGAGATC 284729 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 || || ||||| |||| || || |||||| || || | |||||||||| || Sbjct 284730 CAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAAC 284789 Query 14115 AAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172 || | | ||| |||| | ||||| || | ||||||||||||||| || | | Sbjct 284790 AAGAAGTTAGCCTCCTTAGCATCCTTGATAT--AAGTATCAATAAGTAAGGAGTAAGTCT 284847 Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATT 14232 ||| || || || ||||| || || || || || || || | || || | | Sbjct 284848 CAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATCT 284907 Query 14233 GTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 | || || | || | ||||| || | | || ||||| || |||||||| || ||| Sbjct 284908 GGACCTCACCAG-AGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGCA 284966 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAA 14348 || || || | | |||||| || ||| |||| || | | | || ||| Sbjct 284967 AAGAAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCATTAAGACGGTGTTCCCAG 285026 Query 14349 TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408 || | |||||| |||||| | || ||| | ||||| ||| || |||||| Sbjct 285027 TCACTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGCTTGC 285086 Query 14409 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 || |||||| ||| || || | || ||||| || | |||||||| Sbjct 285087 TTGTACATTTGCCAGATCTCATGGTACTTGATAGGGAACAAGACAAATCT 285136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727004564400