Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq78 125 7e-24
>seq78
Length=1347436
Score = 125 bits (138), Expect = 7e-24
Identities = 567/890 (64%), Gaps = 19/890 (2%)
Strand=Plus/Plus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
|||||| || ||| ||||| || || ||||| ||||| ||||| || || || ||
Sbjct 284255 TTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATGTT 284314
Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699
||||| ||||| || ||||| | | | | || || | || || | |
Sbjct 284315 CTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCAAGGGAAAGCAA 284374
Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759
|||||| ||||| | ||||||||| |||||| |||| | | | |||||| || | ||
Sbjct 284375 TAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAGAAG 284434
Query 13760 TTTTACA-GGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818
| ||| || | || || || ||||| ||||| ||| ||||| || | ||||
Sbjct 284435 ACT-ACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAATAA 284493
Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACAC 13874
| || || || || ||| | | || || || ||||| |||||
Sbjct 284494 TCTTTTCAACAACAGACTTCTTAGG----TCTGTTGACAAGGTGGCCAAAAAGCAAACAA 284549
Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934
|| |||||| || | ||| ||||| | | ||| | || || || || || || ||
Sbjct 284550 GCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCA 284609
Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994
||||| | || || || || |||||||| || ||||||||| || || ||||| ||
Sbjct 284610 GGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATA 284669
Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054
||||| || ||||| || || | | || || |||| | | || | | || |||
Sbjct 284670 CCCTCGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGAGATC 284729
Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114
|| || ||||| |||| || || |||||| || || | |||||||||| ||
Sbjct 284730 CAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAAC 284789
Query 14115 AAATATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172
|| | | ||| |||| | ||||| || | ||||||||||||||| || | |
Sbjct 284790 AAGAAGTTAGCCTCCTTAGCATCCTTGATAT--AAGTATCAATAAGTAAGGAGTAAGTCT 284847
Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATT 14232
||| || || || ||||| || || || || || || || | || || | |
Sbjct 284848 CAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATCT 284907
Query 14233 GTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291
| || || | || | ||||| || | | || ||||| || |||||||| || |||
Sbjct 284908 GGACCTCACCAG-AGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGCA 284966
Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAA 14348
|| || || | | |||||| || ||| |||| || | | | || |||
Sbjct 284967 AAGAAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCATTAAGACGGTGTTCCCAG 285026
Query 14349 TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408
|| | |||||| |||||| | || ||| | ||||| ||| || ||||||
Sbjct 285027 TCACTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGCTTGC 285086
Query 14409 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458
|| |||||| ||| || || | || ||||| || | ||||||||
Sbjct 285087 TTGTACATTTGCCAGATCTCATGGTACTTGATAGGGAACAAGACAAATCT 285136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479727004564400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |