Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq78 150 2e-31 >seq78 Length=1347436 Score = 150 bits (166), Expect = 2e-31 Identities = 577/892 (65%), Gaps = 23/892 (3%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 |||||| || ||| ||||| || || || || ||||| ||||| || || || || Sbjct 284255 TTTTTGGTAGTCAGAGACTCTCTTCTCGAAGAAATTAGTCTTACCAGAGAGAGAGATGTT 284314 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| |||||||| ||||| || | | | || || | || || | || Sbjct 284315 CTCCATGAAATCGAAGGGATTAGTAGCATTGTAGACCTTGTTGTTTCCAAGGGAAAGCAA 284374 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||| ||||| | ||||||||| |||||| |||| | | | |||||| || | || Sbjct 284375 TAATCTGTCAGCGACAAACTCAATGTATTGACACATGAGCTTAGCATTCATTCCAAGAAG 284434 Query 13548 TTTTACA-GGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 | ||| || | || ||| || ||||| ||||| ||| ||||| || | |||| Sbjct 284435 ACT-ACATGGCAAGGCATCAGTCAAGAATTCCTTTTCAATACCGACAGCTTCAGTAATAA 284493 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACAC 13662 | | | || || || ||| | | || || || ||||| ||||| Sbjct 284494 TCTTTTCAACAACAGACTTCTTAGG----TCTGTTGACAAGGTGGCCAAAAAGCAAACAA 284549 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 || |||||| || | ||| ||||| | | ||| | || || || || || || || Sbjct 284550 GCGAAATCAGTGTGCATGCCTTCATCACGAGAAATCAACTCATTAGAGAAAGTCAAACCA 284609 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 ||||| | || || || || |||||||| || ||| ||||| || || ||||| || Sbjct 284610 GGCATAAGACCACGCTTCTTCAACCAAAAGATACTAGCAAATGAACCAGAGAAGAAGATA 284669 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 ||||| || ||||| || || | || || || |||| | | || | | || ||| Sbjct 284670 CCCTCGACAGCAGCGAAAGCAACGAGACGCTCAGCAAAGGTAGATTGATCATCAGAGATC 284729 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 || || ||||| |||| || || |||||| || || | || || |||| ||| Sbjct 284730 CAAGTTAGGGCCCAGTCAGCCTTCTTCTTAATACAAGGAATGTTATCAATAGCATGGAAC 284789 Query 13903 AA-ATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 || | ||| ||| |||| | ||||| || | ||||||||||||||| || | Sbjct 284790 AAGAAGTTAGC-CTCCTTAGCATCCTTGATAT--AAGTATCAATAAGTAAGGAGTAAGTC 284846 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 |||| || || || || || || || || || || ||||| | || || | Sbjct 284847 TCAGCATGGATATTCTCCATCATGATTTGGAATCCGTAGAAACACTTGGCCTCAGGAATC 284906 Query 14020 TGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || ||||| | || | ||||| || | | ||| ||||| ||||||||||| || || Sbjct 284907 TGGACCTCACCAG-AGAATCTCTCAACAAGGTTCTCATTGACAATACCATCGGAGGCAGC 284965 Query 14079 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCA 14135 ||| || || | | |||||| || ||| |||| || | | | || ||| Sbjct 284966 AAAGAAAGCGAGCACACGAGAGATAAAGAATCTCTCATCATCATTAAGACGGTGTTCCCA 285025 Query 14136 ATCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 || |||| |||||| |||||| | || ||| | ||||| ||| || |||||| Sbjct 285026 GTC-ACTAATATCCTTTCCAAGATCAATCTCTTCAGCAGTCCAGAAAGAGGCCTCAGCTT 285084 Query 14195 TTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 || |||||| ||| || || | || ||||| || | |||||||| Sbjct 285085 GCTTGTACATTTGCCAGATCTCATGGTACTTGATAGGGAACAAGACAAATCT 285136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587806928240