Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq78 170 3e-37
seq79 109 8e-19
>seq78
Length=1347436
Score = 170 bits (188), Expect = 3e-37
Identities = 572/879 (65%), Gaps = 25/879 (3%)
Strand=Plus/Minus
Query 124986 AGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAG 125045
|||||| | |||| || |||| ||| ||||| || ||| |||||||||| | ||| ||
Sbjct 285136 AGATTTGTCTTGTTCCCTATCAAGTACCATGAGATCTGGCAAATGTACAAGCAAGCTGAG 285077
Query 125046 GCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT 125105
||||| || ||||| | |||||| | ||||| ||||| | || |||||
Sbjct 285076 GCCTCTTTCTGGACTGCTGAAGAGATTGATCTTGGAAAGGATATTAGTGACTGGGAACAC 285017
Query 125106 CGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCC 125165
||| | | ||| |||| || ||||| || | | | || |||||||| | ||||
Sbjct 285016 CGTCTTAATGATGATGAGAGATTCTTTATCTCTCGTGTGCTCGCTTTCTTTGCTGCCTCC 284957
Query 125166 GATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGA 125224
||||| || ||||| || || || ||||| | |||||||| ||| | ||||| ||
Sbjct 284956 GATGGTATTGTCAATGAGAACCTTGTTGAGA-GATTCTCTGGTGAGGTCCAGATTCCTGA 284898
Query 125225 GGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTC 125284
|| ||| || |||||||||||||||||||| ||||| | || | || | |||||
Sbjct 284897 GGCCAAGTGTTTCTACGGATTCCAAATCATGATGGAGAATATCCATGCTGAGACTTACTC 284838
Query 125285 TACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAACGCA 125342
||| ||||| | || || ||| || | | | | || | | || | ||
Sbjct 284837 CTTACTTATTGATACTTATATCAAGGAT--GCTAAGGAGGCTAACTTCTTGTTCCATGCT 284780
Query 125343 ATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC 125402
|| || | | || | ||| || |||||| | |||| | |||||| |||
Sbjct 284779 ATTGATAACATTCCTTGTATTAAGAAGAAGGCTGACTGGGCCCTAACTTGGATCTCTGAT 284720
Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462
|| | ||| | | || || | || || || ||||| || || ||||| ||||||||
Sbjct 284719 GATCAATCTACCTTTGCTGAGCGTCTCGTTGCTTTCGCTGCTGTCGAGGGTATCTTCTTC 284660
Query 125463 TCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522
|| ||| ||||| ||||||||| | |||||||| || || ||||| || ||||
Sbjct 284659 TCTGGTTCATTTGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCTGGTTTGACT 284600
Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582
| ||| ||||| || ||||| || || ||| | ||| ||| || || | | ||
Sbjct 284599 TTCTCTAATGAGTTGATTTCTCGTGATGAAGGCATGCACACTGATTTCGCTTGTTTGCTT 284540
Query 125583 TTTCGCAAC--TATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTG 125640
||| || || | || | || | | || || | ||||||| |||
Sbjct 284539 TTTGGCCACCTTGTCAACAGACCTA-AGAAG-TCTGTTGTTGAAAAG---------ATTA 284491
Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700
| || || || || | || ||| | || || | || || || | || || |
Sbjct 284490 TTACTGAAGCTGTCGGTATTGAAAAGGAATTCTTGACTGATGCCTTGCCATGTAGTCTTC 284431
Query 125701 TTGGCATGAACTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759
|||| ||||| ||| ||||| ||||| | ||||| |||||||| || || | || ||
Sbjct 284430 TTGGAATGAA-TGCTAAGCTCATGTGTCAATACATTGAGTTTGTCGCTGACAGATTATTG 284372
Query 125760 --TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817
| | | || | |||| | ||||| || | |||||||| ||||||||| |
Sbjct 284371 CTTTCCCTTGGA--AACAACAAGGTCTACAATGCTACTAATCCCTTCGATTTCATGGAGA 284314
Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856
||| || || |||||||| || || ||||||||||
Sbjct 284313 ACATCTCTCTCTCTGGTAAGACTAATTTCTTCGAGAAGA 284275
>seq79
Length=299291
Score = 109 bits (120), Expect = 8e-19
Identities = 321/487 (66%), Gaps = 12/487 (2%)
Strand=Plus/Plus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
|||| ||| || || || || || | ||||| ||| | ||| | |||||||| ||||
Sbjct 118522 GATATGTTGACCAAGGTGGTAACAAGAGACCAGGTGCTTTCGCCATGTACTTGGAGCCTT 118581
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
|||||| || |||||||| || ||||| |||| || ||| || ||||| | |
Sbjct 118582 GGCACGACGATGTTTTTGAATTCATCGACTTGCGAAAGAACCACGGTAAGGAAGAAGTCC 118641
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA-- 97042
| ||||| || ||||| | || || ||| | || || |||||||||||| | |||||
Sbjct 118642 GTGCCAGAGATTTGTTCTTGGCCCTTTGGATCCCCGACTTGTTCATGAAGAGAGTCAAGG 118701
Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
| | | || | |||| | |||||||| | || || ||| || ||| ||
Sbjct 118702 CTAACGAGG--ATTGGACTTTGATGTGCCCTAATGAGTGTCCTGGTTTGGACGAGGTCTA 118759
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162
|| || || |||| ||| || || || |||| ||| | | || ||| |
Sbjct 118760 TGGAGACGAATTTGTTGCCCTCTATGAAAAGTATGAAAAAGAAGGC--AAAGGT-AGAAG 118816
Query 97163 A---GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218
| || | || | |||| || ||| | || ||| | ||| || |||||||| |
Sbjct 118817 AACTATCAAGGCTC-AGAAGCTCTGGTATGCTATCCTTGAGGCCCAAACTGAGACTGGTA 118875
Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278
|| | ||| |||||||||||| | || |||| || || |||| || |||| |
Sbjct 118876 ACCCCTTCATGCTCTACAAGGATGCTTGTAACAGCAAGAGTAATCAACAAAACCTGGGTA 118935
Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338
| ||||| ||||| ||||| |||||||| |||||| | ||||| || || ||
Sbjct 118936 CTATCAAATCTTCCAACTTGTGCTGTGAAATTGTCGAGTACTCTTCTCCTGAAGAAGTGG 118995
Query 97339 CAGTTTG 97345
| |||||
Sbjct 118996 CTGTTTG 119002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057662302160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |