Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq78 170 3e-37 seq79 109 8e-19 >seq78 Length=1347436 Score = 170 bits (188), Expect = 3e-37 Identities = 572/879 (65%), Gaps = 25/879 (3%) Strand=Plus/Minus Query 124986 AGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAG 125045 |||||| | |||| || |||| ||| ||||| || ||| |||||||||| | ||| || Sbjct 285136 AGATTTGTCTTGTTCCCTATCAAGTACCATGAGATCTGGCAAATGTACAAGCAAGCTGAG 285077 Query 125046 GCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT 125105 ||||| || ||||| | |||||| | ||||| ||||| | || ||||| Sbjct 285076 GCCTCTTTCTGGACTGCTGAAGAGATTGATCTTGGAAAGGATATTAGTGACTGGGAACAC 285017 Query 125106 CGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCC 125165 ||| | | ||| |||| || ||||| || | | | || |||||||| | |||| Sbjct 285016 CGTCTTAATGATGATGAGAGATTCTTTATCTCTCGTGTGCTCGCTTTCTTTGCTGCCTCC 284957 Query 125166 GATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGA 125224 ||||| || ||||| || || || ||||| | |||||||| ||| | ||||| || Sbjct 284956 GATGGTATTGTCAATGAGAACCTTGTTGAGA-GATTCTCTGGTGAGGTCCAGATTCCTGA 284898 Query 125225 GGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTC 125284 || ||| || |||||||||||||||||||| ||||| | || | || | ||||| Sbjct 284897 GGCCAAGTGTTTCTACGGATTCCAAATCATGATGGAGAATATCCATGCTGAGACTTACTC 284838 Query 125285 TACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC--ACATGCTCTTTAACGCA 125342 ||| ||||| | || || ||| || | | | | || | | || | || Sbjct 284837 CTTACTTATTGATACTTATATCAAGGAT--GCTAAGGAGGCTAACTTCTTGTTCCATGCT 284780 Query 125343 ATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC 125402 || || | | || | ||| || |||||| | |||| | |||||| ||| Sbjct 284779 ATTGATAACATTCCTTGTATTAAGAAGAAGGCTGACTGGGCCCTAACTTGGATCTCTGAT 284720 Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 || | ||| | | || || | || || || ||||| || || ||||| |||||||| Sbjct 284719 GATCAATCTACCTTTGCTGAGCGTCTCGTTGCTTTCGCTGCTGTCGAGGGTATCTTCTTC 284660 Query 125463 TCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 || ||| ||||| ||||||||| | |||||||| || || ||||| || |||| Sbjct 284659 TCTGGTTCATTTGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCTGGTTTGACT 284600 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582 | ||| ||||| || ||||| || || ||| | ||| ||| || || | | || Sbjct 284599 TTCTCTAATGAGTTGATTTCTCGTGATGAAGGCATGCACACTGATTTCGCTTGTTTGCTT 284540 Query 125583 TTTCGCAAC--TATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTG 125640 ||| || || | || | || | | || || | ||||||| ||| Sbjct 284539 TTTGGCCACCTTGTCAACAGACCTA-AGAAG-TCTGTTGTTGAAAAG---------ATTA 284491 Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700 | || || || || | || ||| | || || | || || || | || || | Sbjct 284490 TTACTGAAGCTGTCGGTATTGAAAAGGAATTCTTGACTGATGCCTTGCCATGTAGTCTTC 284431 Query 125701 TTGGCATGAACTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 |||| ||||| ||| ||||| ||||| | ||||| |||||||| || || | || || Sbjct 284430 TTGGAATGAA-TGCTAAGCTCATGTGTCAATACATTGAGTTTGTCGCTGACAGATTATTG 284372 Query 125760 --TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 | | | || | |||| | ||||| || | |||||||| ||||||||| | Sbjct 284371 CTTTCCCTTGGA--AACAACAAGGTCTACAATGCTACTAATCCCTTCGATTTCATGGAGA 284314 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856 ||| || || |||||||| || || |||||||||| Sbjct 284313 ACATCTCTCTCTCTGGTAAGACTAATTTCTTCGAGAAGA 284275 >seq79 Length=299291 Score = 109 bits (120), Expect = 8e-19 Identities = 321/487 (66%), Gaps = 12/487 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||| ||| || || || || || | ||||| ||| | ||| | |||||||| |||| Sbjct 118522 GATATGTTGACCAAGGTGGTAACAAGAGACCAGGTGCTTTCGCCATGTACTTGGAGCCTT 118581 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||||| || |||||||| || ||||| |||| || ||| || ||||| | | Sbjct 118582 GGCACGACGATGTTTTTGAATTCATCGACTTGCGAAAGAACCACGGTAAGGAAGAAGTCC 118641 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA-- 97042 | ||||| || ||||| | || || ||| | || || |||||||||||| | ||||| Sbjct 118642 GTGCCAGAGATTTGTTCTTGGCCCTTTGGATCCCCGACTTGTTCATGAAGAGAGTCAAGG 118701 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | | | || | |||| | |||||||| | || || ||| || ||| || Sbjct 118702 CTAACGAGG--ATTGGACTTTGATGTGCCCTAATGAGTGTCCTGGTTTGGACGAGGTCTA 118759 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162 || || || |||| ||| || || || |||| ||| | | || ||| | Sbjct 118760 TGGAGACGAATTTGTTGCCCTCTATGAAAAGTATGAAAAAGAAGGC--AAAGGT-AGAAG 118816 Query 97163 A---GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 | || | || | |||| || ||| | || ||| | ||| || |||||||| | Sbjct 118817 AACTATCAAGGCTC-AGAAGCTCTGGTATGCTATCCTTGAGGCCCAAACTGAGACTGGTA 118875 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 || | ||| |||||||||||| | || |||| || || |||| || |||| | Sbjct 118876 ACCCCTTCATGCTCTACAAGGATGCTTGTAACAGCAAGAGTAATCAACAAAACCTGGGTA 118935 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338 | ||||| ||||| ||||| |||||||| |||||| | ||||| || || || Sbjct 118936 CTATCAAATCTTCCAACTTGTGCTGTGAAATTGTCGAGTACTCTTCTCCTGAAGAAGTGG 118995 Query 97339 CAGTTTG 97345 | ||||| Sbjct 118996 CTGTTTG 119002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057662302160