Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq32 116 3e-21 seq90 105 5e-18 seq111 102 6e-17 >seq32 Length=396137 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| |||||||| ||||||||||| ||| | | ||||||| Sbjct 381681 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCC 381740 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | |||||||| |||||||| ||||| ||||| ||||| | Sbjct 381741 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 381800 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || | || ||||| || | || || || | || ||||| ||| Sbjct 381801 ATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTA 381860 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || |||||||| Sbjct 381861 CCAGTAAGGGTCTTTACGAAGATTTGCAT 381889 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || |||||||| || || |||| ||||||| Sbjct 380541 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCTGCCGTCTTCC 380600 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || |||||| | || | |||||||||||| ||||| || || ||||| Sbjct 380601 AACTGCTTACCAGCGAAGATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 380660 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || | || ||||| || | || || || | ||| ||||| || Sbjct 380661 ATCTTGGTCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATGGTCTTG 380720 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || ||||| ||||||||| Sbjct 380721 CCGGTCAGAGTCTTGACAAAGATTTGCATA 380750 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| |||||||| ||||||||||| ||| | | | || || Sbjct 380997 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCG 381056 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | |||||||| |||||||| ||||| || || ||||| Sbjct 381057 AGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGG 381116 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| ||| | || ||||| ||| | ||| || || | || ||||| ||| Sbjct 381117 ATCTTGGTCTTAACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTA 381176 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || || ||||||||| Sbjct 381177 CCAGTCAAGGTCTTGACGAAGATTTGCATA 381206 >seq90 Length=207308 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || ||||| ||||||||||| ||| | | |||| || | ||| Sbjct 159087 TGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCCTCAAGTTGC 159146 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || |||||||| || ||||| || ||| Sbjct 159147 TTACCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTG 159206 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | || ||||| ||| | || || || | ||| ||||| ||||| || Sbjct 159207 GTCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTACCGGTA 159266 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||||||||| Sbjct 159267 AGGGTCTTGACGAAAATTTGCAT 159289 >seq111 Length=751517 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | ||||| || || || ||||| |||||||| || Sbjct 299256 CCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 299197 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| | ||| || |||||| | || | ||||||||| || ||| Sbjct 299196 AGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGA 299137 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| |||| ||| | || ||||| ||| | || || Sbjct 299136 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCGACC 299077 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 || | ||| ||||| ||||| || || || || || ||| Sbjct 299076 TCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAAA 299038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178467266206