Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06-
23] 166 sequences; 16,642,635 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq78 147 5e-30
seq32 145 2e-29
seq111 132 1e-25
>seq78
Length=1347436
Score = 147 bits (162), Expect = 5e-30
Identities = 398/605 (66%), Gaps = 12/605 (2%)
Strand=Plus/Minus
Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750
||||| | |||||||| | || || || || | ||| || ||| ||||||||
Sbjct 285145 AACCCTAACAGATTTGTCTTGTTCCCTATCAAGTACCATGAGATCTGGCAAATGTACAAG 285086
Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810
|| || | || ||||| ||||||| ||||| | ||||| | || | | ||
Sbjct 285085 CAAGCTGAGGCCTCTTTCTGGACTGCTGAAGAGATTGATCTTGGAAAGGATATTAGTGAC 285026
Query 268811 TGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTT 268867
||| || | | | || || || ||| ||||| ||| | | || || || |||
Sbjct 285025 TGGGAACACCGTCTTAATGATGATGAGAGATTCTTTATCTCTCGTGTGCTCGCTTTCTTT 284966
Query 268868 GCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAG 268927
|| | |||||||| || || || || || || |||| |||| | ||||| |||
Sbjct 284965 GCTGCCTCCGATGGTATTGTCAATGAGAACCTTGTTGAGAGATTCTCTGGTGAGGTCCAG 284906
Query 268928 ATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAG 268987
|||||||| |||| ||||| ||||||||||| || || || ||||| ||| | |||
Sbjct 284905 ATTCCTGAGGCCAAGTGTTTCTACGGATTCCAAATCATGATGGAGAATATCCATGCTGAG 284846
Query 268988 ATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT 269047
| ||| || | || ||||||||||| | ||| || || || | ||
Sbjct 284845 ACTTACTCCTTACTTATTGATACTTATATCAAGGATGCTAAGGAGGCTAACTTCTTGTTC 284786
Query 269048 TCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT 269106
| |||| || ||| || ||| | | || || |||| ||||| || | |||||
Sbjct 284785 CATGCTATTGATAAC-ATTCCTTGTATTAAGAAGAAGGCTGACTGGGCCCTAACTTGGAT 284727
Query 269107 AAACGAT-----AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGT 269161
||| | | | || | ||| | | |||||||| || ||||| || |||
Sbjct 284726 CTCTGATGATCAATCTACCTTTGCTGAGC--GTCTCGTTGCTTTCGCTGCTGTCGAGGGT 284669
Query 269162 ATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA 269221
|| ||||| || || || ||||| |||||||||||||||||| | || ||||||||
Sbjct 284668 ATCTTCTTCTCTGGTTCATTTGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCT 284609
Query 269222 GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281
|| || ||||||||||| || ||||| | || ||||| | ||| || ||||||
Sbjct 284608 GGTTTGACTTTCTCTAATGAGTTGATTTCTCGTGATGAAGGCATGCACACTGATTTCGCT 284549
Query 269282 TGTTT 269286
|||||
Sbjct 284548 TGTTT 284544
>seq32
Length=396137
Score = 145 bits (160), Expect = 2e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || || ||||| || |||||||| |||||||| || ||
Sbjct 381221 AAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCATC 381280
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| || |||||||| || || || ||||| || || || || || || |||||
Sbjct 381281 CTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATC 381340
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || ||||| || | ||| || || ||||| || || || |||||
Sbjct 381341 CTGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGT 381400
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||||||| || || || || || || |||||
Sbjct 381401 CTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433
Score = 141 bits (156), Expect = 2e-28
Identities = 152/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| |||||||| || || || || ||||| ||||| | ||||||||| ||||| || |||
Sbjct 381693 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCCAGTTGCTTACCA 381752
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| | | |||||| || ||||| || ||||| || || |||||||| | ||
Sbjct 381753 GCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGTCTTG 381812
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| || || || ||||| || || || |||||||||||||| ||
Sbjct 381813 ACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTACCAGTAAGGGTC 381872
Query 104543 TTTACAAATATCTGCATTTTG 104563
||||| || || |||||| ||
Sbjct 381873 TTTACGAAGATTTGCATTATG 381893
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || || || || || |||||||| ||||| | || ||
Sbjct 381449 AAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATC 381508
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| || |||||||| || || || ||||| || || || || || || || ||
Sbjct 381509 CTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTGTC 381568
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| ||||| | || ||||| || | ||||| || ||| ||||| || ||||||||
Sbjct 381569 TTGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCGACCTCAAGGGTAATAGT 381628
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| | || || || || || |||||
Sbjct 381629 CTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| |||||||| || || || || ||||| ||||| | || || || ||||| || |||
Sbjct 381009 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCGAGTTGCTTACCA 381068
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| | | |||||| || || || || || || || || || ||||| | ||
Sbjct 381069 GCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTA 381128
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| || ||| || || || || || ||||||||||| | ||
Sbjct 381129 ACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTACCAGTCAAGGTC 381188
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 381189 TTGACGAAGATTTGCAT 381205
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| |||| || | || || || || || || || ||||| || || ||||| || ||
Sbjct 380765 AAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATC 380824
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| || ||||| ||||| | | |||||| || || || || || || || ||
Sbjct 380825 CTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTC 380884
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| ||||| | || || || || | ||| ||| || || ||||| || || || ||
Sbjct 380885 TTGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGT 380944
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||||||| || || || || || || |||||
Sbjct 380945 CTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977
>seq111
Length=751517
Score = 132 bits (146), Expect = 1e-25
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | | || || || || | ||||| || || || || || ||||||
Sbjct 299259 ATACCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCA 299200
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || ||||| || ||||| ||||| || ||||| || || || | |||||||| ||
Sbjct 299199 GAAAGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGG 299140
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| |||||||| || ||||| ||||| | || ||||| || | ||| ||| || ||
Sbjct 299139 GGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCG 299080
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550
||||| || || || |||||||||||||| || || || ||
Sbjct 299079 ACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 299039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151395951119528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |