Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sugiyamaella_20xylanicola_20[genbank_20GCA_5F001939105.2_202017-06- 23] 166 sequences; 16,642,635 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq78 147 5e-30 seq32 145 2e-29 seq111 132 1e-25 >seq78 Length=1347436 Score = 147 bits (162), Expect = 5e-30 Identities = 398/605 (66%), Gaps = 12/605 (2%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 ||||| | |||||||| | || || || || | ||| || ||| |||||||| Sbjct 285145 AACCCTAACAGATTTGTCTTGTTCCCTATCAAGTACCATGAGATCTGGCAAATGTACAAG 285086 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 || || | || ||||| ||||||| ||||| | ||||| | || | | || Sbjct 285085 CAAGCTGAGGCCTCTTTCTGGACTGCTGAAGAGATTGATCTTGGAAAGGATATTAGTGAC 285026 Query 268811 TGGAAAAA---TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTT 268867 ||| || | | | || || || ||| ||||| ||| | | || || || ||| Sbjct 285025 TGGGAACACCGTCTTAATGATGATGAGAGATTCTTTATCTCTCGTGTGCTCGCTTTCTTT 284966 Query 268868 GCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAG 268927 || | |||||||| || || || || || || |||| |||| | ||||| ||| Sbjct 284965 GCTGCCTCCGATGGTATTGTCAATGAGAACCTTGTTGAGAGATTCTCTGGTGAGGTCCAG 284906 Query 268928 ATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAG 268987 |||||||| |||| ||||| ||||||||||| || || || ||||| ||| | ||| Sbjct 284905 ATTCCTGAGGCCAAGTGTTTCTACGGATTCCAAATCATGATGGAGAATATCCATGCTGAG 284846 Query 268988 ATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTT 269047 | ||| || | || ||||||||||| | ||| || || || | || Sbjct 284845 ACTTACTCCTTACTTATTGATACTTATATCAAGGATGCTAAGGAGGCTAACTTCTTGTTC 284786 Query 269048 TCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT 269106 | |||| || ||| || ||| | | || || |||| ||||| || | ||||| Sbjct 284785 CATGCTATTGATAAC-ATTCCTTGTATTAAGAAGAAGGCTGACTGGGCCCTAACTTGGAT 284727 Query 269107 AAACGAT-----AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGT 269161 ||| | | | || | ||| | | |||||||| || ||||| || ||| Sbjct 284726 CTCTGATGATCAATCTACCTTTGCTGAGC--GTCTCGTTGCTTTCGCTGCTGTCGAGGGT 284669 Query 269162 ATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA 269221 || ||||| || || || ||||| |||||||||||||||||| | || |||||||| Sbjct 284668 ATCTTCTTCTCTGGTTCATTTGCTAGTATCTTTTGGTTGAAGAAGCGTGGTCTTATGCCT 284609 Query 269222 GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281 || || ||||||||||| || ||||| | || ||||| | ||| || |||||| Sbjct 284608 GGTTTGACTTTCTCTAATGAGTTGATTTCTCGTGATGAAGGCATGCACACTGATTTCGCT 284549 Query 269282 TGTTT 269286 ||||| Sbjct 284548 TGTTT 284544 >seq32 Length=396137 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || || ||||| || |||||||| |||||||| || || Sbjct 381221 AAGGACGAGGTGGAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTGCCATC 381280 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || |||||||| || || || ||||| || || || || || || ||||| Sbjct 381281 CTCGAGTTGCTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTATC 381340 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || ||||| || | ||| || || ||||| || || || ||||| Sbjct 381341 CTGAATCTTGGTCTTAACATTATCGATGGTGTCAGAAGACTCTACTTCGAGAGTGATAGT 381400 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || || || || || || ||||| Sbjct 381401 CTTACCAGTGAGAGTCTTGACGAAGATTTGCAT 381433 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| ||||| | ||||||||| ||||| || ||| Sbjct 381693 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCGTCTTCCAGTTGCTTACCA 381752 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | |||||| || ||||| || ||||| || || |||||||| | || Sbjct 381753 GCGAAAATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGTCTTG 381812 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||| || || || |||||||||||||| || Sbjct 381813 ACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGAGTGATGGTCTTACCAGTAAGGGTC 381872 Query 104543 TTTACAAATATCTGCATTTTG 104563 ||||| || || |||||| || Sbjct 381873 TTTACGAAGATTTGCATTATG 381893 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || || || || || |||||||| ||||| | || || Sbjct 381449 AAGGACGAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATC 381508 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || |||||||| || || || ||||| || || || || || || || || Sbjct 381509 CTCGAGTTGCTTGCCAGCAAAGATGAGTCTTTGTTGGTCTGGGGGAATACCCTCCTTGTC 381568 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| | || ||||| || | ||||| || ||| ||||| || |||||||| Sbjct 381569 TTGGATCTTGGTCTTGACATTGTCAATAGTATCAGAAGATTCGACCTCAAGGGTAATAGT 381628 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || || || || ||||| Sbjct 381629 CTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 381661 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| ||||| | || || || ||||| || ||| Sbjct 381009 GTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCATCCTCGAGTTGCTTACCA 381068 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | |||||| || || || || || || || || || ||||| | || Sbjct 381069 GCGAAAATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTA 381128 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| || || || || || ||||||||||| | || Sbjct 381129 ACATTATCGATGGTGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTACCAGTCAAGGTC 381188 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 381189 TTGACGAAGATTTGCAT 381205 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || | || || || || || || || ||||| || || ||||| || || Sbjct 380765 AAGGACTAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCATC 380824 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || ||||| ||||| | | |||||| || || || || || || || || Sbjct 380825 CTCAAGTTGCTTACCAGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTC 380884 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| | || || || || | ||| ||| || || ||||| || || || || Sbjct 380885 TTGGATCTTGGTCTTAACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGT 380944 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || || || || || || ||||| Sbjct 380945 CTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 380977 >seq111 Length=751517 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || || || | ||||| || || || || || |||||| Sbjct 299259 ATACCACCTCTCAAACGGAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCA 299200 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||| ||||| || ||||| || || || | |||||||| || Sbjct 299199 GAAAGGGTTCTGCCATCTTCGAGTTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGG 299140 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| | || ||||| || | ||| ||| || || Sbjct 299139 GGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCGGAAGACTCG 299080 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 ||||| || || || |||||||||||||| || || || || Sbjct 299079 ACCTCGAGGGTGATGGTCTTACCAGTAAGGGTCTTGACGAA 299039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395951119528